| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3608 |
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| Symbol | |
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| ID | 7970683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3819009 |
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| End bp | 3820346 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794193 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002945491 |
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| Protein GI | 239816581 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.704164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATCTC CGAACTCCGA GCCTTCTTCC GGCGATTCGC CTGCCGTCCC ACCGGCAACT
CCCCCTTCTT CGTCTCCGCC TGCGCGGCCG CCCTCGCGCC GCAGGCTCTG GCTCGGCAGC
CTGATCGCGC TGGTGCTGCT GCTGGTGCTG GGGGGCGGCG CCTGGTACCT CATCAACCGC
AAGGGCAGCT CCGCCGGCGG GCCGGGCTTC GGCGGCGCGA CCGTCACGGT GGGCCACGCG
GCGGCGCGCG AGATCGAATT GCCGGTGACC ATCGATGCGC TCGGCACGGT CACGCCGCTG
GCCACCATCA CGCTCAAGGC GCAGGTCGGC GGCGTGCTGA CCGAGGTGCT GTTCACCGAA
GGGCAGACTG TGGCAAGGAA CCAGCTGCTC GCGCGCATCG ATCCCAGGCC CTATGAGCAG
GCGCTGATGC AGGCCCGCGG CACGCGCCAG CGCGACGAGG CGCAGCTCGA GGCCGCGCGC
GTCACGCTCG CGCGCTACCG CACCCTGCTG GGGCAGGACT CCATCGCCCG GCAGGACGTC
GACACCCAGG CCGCGCTGGT CCGCCAGCTC GAAGGCACGG TCACCACCGA CCTGGCCGCC
GAGGCCGCCG CCAAGCTGAA CCTCGACTAC ACCCGCATCA CAGCGCCGGT GGCCGGCCGC
ATCGGCCTGC GCGCGGTGGA TGCGGGCAAC ACCGTGACGG CCAACGCGAC CACGGGCATC
GCGGTCATCA CGCAGATGAA CCCGATCGAC GTGCAGTTCT CGGTGCCGCA GGACCGCGTG
CCCGACATCC AGGCGCAGCT GGCCAAGGGC GAGCCGCTGC CGGTCACGGC CTTCGACCGC
ACCCGCGCCG CAACGCTCGA CACTGGCACC TTCTCCACGC TCGACAACGT GGTCGACACC
ACCACCGGCA CGGTCAAGGC CAAGGCGCGC TTCGGCAATG CGCAGACCAC GCTGTTCCCG
AGCCAGTTCG TCAATGTGCA GATGCTGCTG CGCAAGGTGC GCGCGGTGGT GGTGCCGGTG
ACGGCGGTGC GCACCGGTCC CAACGGCGAC TACGTCTATG TGATCAACGA GGACCGCACG
GTGTCGATGC GCGCGGTGAA ACGCGGCGAG GCCAACGTCG AGGTGGTGGC CATCACCTCG
GGCCTGAAGG CGGGCGAGAA CGTGGTGACC GAGGGCGGCG ACCGCATCAA GGACGGCGCG
GTCGTGCAGC TGCAGGGCGA CCGGCCCGCG GCAGGTCCGC GCGGCGGCGC TTCGGGGCCG
CGCGGTGCGG CTTCGGGCCC GCGTGGGCAG CGCGGCGAAG GCAGTGGGGA GCGGCGGCGC
CAGCGTCCGC CGCAATGA
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| Protein sequence | MESPNSEPSS GDSPAVPPAT PPSSSPPARP PSRRRLWLGS LIALVLLLVL GGGAWYLINR
KGSSAGGPGF GGATVTVGHA AAREIELPVT IDALGTVTPL ATITLKAQVG GVLTEVLFTE
GQTVARNQLL ARIDPRPYEQ ALMQARGTRQ RDEAQLEAAR VTLARYRTLL GQDSIARQDV
DTQAALVRQL EGTVTTDLAA EAAAKLNLDY TRITAPVAGR IGLRAVDAGN TVTANATTGI
AVITQMNPID VQFSVPQDRV PDIQAQLAKG EPLPVTAFDR TRAATLDTGT FSTLDNVVDT
TTGTVKAKAR FGNAQTTLFP SQFVNVQMLL RKVRAVVVPV TAVRTGPNGD YVYVINEDRT
VSMRAVKRGE ANVEVVAITS GLKAGENVVT EGGDRIKDGA VVQLQGDRPA AGPRGGASGP
RGAASGPRGQ RGEGSGERRR QRPPQ
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