| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3602 |
|---|
| Symbol | |
|---|
| ID | 7970677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3808121 |
|---|
| End bp | 3809455 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644794187 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002945485 |
|---|
| Protein GI | 239816575 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0673474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACG TCTTCCACCG CCACCTTCGC CACACCCCGC CGGTTGCCGC CGGCTCCAGC
GGCATGTTCA TCCGCGATGC CGAAGGGCGC GAATACCTCG ACGCCTCTGG CGGCGCGGCC
GTGTCTTCGC TCGGCCACGC GCATCCCGAG GTGCTGGCCG CCATGCATGC GCAGCTCGAC
AAGCTCGCTT ATGCCCACAC CAGTTTCTTC ACCAGCGAAG TGGCCGAGCA GCTGGCCGAC
GAGCTGATCG CTTCCGCGCC CGAGGGCATG AGCCACGTGT ACCTGGTGAG CGGCGGCTCC
GAGGCGGTGG AGGCGGCGCT CAAGATGGCG CGGCAGTATT TCGTCGAGAC CGGCCAGCCG
CAGCGCACGC ACTTCATCGC GCGCCGCCAG AGCTACCACG GCAACACGCT GGGCGCGCTG
GCCGTGGGCG GCAACGCGTG GAGGCGCGAA CCGTTCGCGC CCATCCTGGT GCCGGCCACC
CATGTGGCGC CGTGCTATCC GTACCGCGAG CAGCGCGCCG ATGAAAGCGC CGAGCAGTAC
GGCCTGCGCC TGGCGGCCGA GCTCGAAGCG GCCATCGTCG CGCAGGGTGC CGACCGCGTG
ATCGCCTTCG TGGCGGAAAC GGTGGGCGGC GCGACGGCCG GCGTGCTCAC GCCCGTGCCG
GGCTACTTCA AGGCGGTGCG CGCGGTGTGC GACAAGTACG GCGTGCTGCT GATCCTCGAC
GAGGTGATGT GCGGCATGGG CCGCACCGGC ACGCTGCACG CCTGCGAGCA GGAGGGCGTG
GTGCCCGACC TGGTCACCAT CGCCAAGGGC CTGGGCGGCG GCTACCAGCC GATCGGCGCG
GTGCTGGCGC AGCGCAGGAT CGTCGAGGCC ATGTCCAGTG GCAGCGGCTT CTTCCAGCAT
GGCCACACCT ACCTCGGCCA TCCGATGGCC TGCGCGGCGG CGCTCGCGGT GCAGCAGGTG
ATCCGGCGCG ACGGCCTGGT CGCCAAGGTG CGCGAAGACG GCGCGGCCTT CGGCGCGATG
CTGGCCGAGG CGCTCGGCGG CCACGCCCAT GTGGGCAACA TCCGCGGCCG CGGCTTCTTC
TGGGGTATCG AGCTGGTGGC CGACCGCGCG AGCAAGGCGC CGTTCGATCC GGCGCTGAAG
CTCCACGCGC TCATCAAGAA GGACGCGATG TCGCGCGGCC TGCTGTGCTA CCCCTTCGGC
GGCACGGTCG ACGGCCGGCA GGGCGACCAC GTGCTGCTTG CGCCGCCCTT CATTGCCACG
CGGCAGCAGC TGCAGGAGAT CGCGGCCCGC CTCGCGGCTT CGATCGATGC GGTGACGCGC
GCCGCCGCGC GCTGA
|
|---|
| Protein sequence | MTHVFHRHLR HTPPVAAGSS GMFIRDAEGR EYLDASGGAA VSSLGHAHPE VLAAMHAQLD
KLAYAHTSFF TSEVAEQLAD ELIASAPEGM SHVYLVSGGS EAVEAALKMA RQYFVETGQP
QRTHFIARRQ SYHGNTLGAL AVGGNAWRRE PFAPILVPAT HVAPCYPYRE QRADESAEQY
GLRLAAELEA AIVAQGADRV IAFVAETVGG ATAGVLTPVP GYFKAVRAVC DKYGVLLILD
EVMCGMGRTG TLHACEQEGV VPDLVTIAKG LGGGYQPIGA VLAQRRIVEA MSSGSGFFQH
GHTYLGHPMA CAAALAVQQV IRRDGLVAKV REDGAAFGAM LAEALGGHAH VGNIRGRGFF
WGIELVADRA SKAPFDPALK LHALIKKDAM SRGLLCYPFG GTVDGRQGDH VLLAPPFIAT
RQQLQEIAAR LAASIDAVTR AAAR
|
|---|
| |