Gene Vapar_3594 details

Gene Information

• Locus tag: Vapar_3594
• ID: 7970669
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3798518
• End bp: 3800398
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644794179
• Product: histidine kinase
• Protein accession: YP_002945477
• Protein GI: 239816567
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4585] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.2055
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGAGCC GGCAGCCCGC ATCGCCCGCA CAGGCACTGC TTGCCGCGTT GATGGGCGCC 
CTTCTTTTCT TCCTCCTTGT TTCCATCCCT GCGACGACGC TCGCGCAGCA GCCCCCTCCT 
CCCGAGTTCC ATGTCGAGGC AGTGCGGAGC ACGGGCTGGA ACGAGACCAG CCCGCCGACC 
GACGGATGGA CGCGCGTCAC GCTGCCCGAC AGCTGGGCCG AACGCTGGCC CGGCTTCGAC 
GGCGTGGTCT GGTACCGGCT CACCTGGGAC CAGCCCGCAG AGGTCACCGA GGTCGGCTTG 
CTGCTGCACT ACCTCAACAT GGCCGGCGCG GTGTCGCTCA ACGGCACCCC GATCTGGCGC 
GACCAAAGCC TGGTCGAGCC GCTGACCCGC GCCTGGAACA GCCCGCGCTA CTGGCTGCTG 
GCGCCGCCGC TGCTGCAGGC GGGCCGCAAC ACGCTGCTGG TACGCGTCTC GGGCCTGTCC 
GCCTACCAGG CCGGCCTCGG CCCGGTCAGC CTGGGCGCAC CCGCGGCCAT GCAGGCGGAG 
TACGGGCAGG AGCGCGTCTG GCGCCGCGAT CTCCAGATGC TCGGGCTCGC GGTGAGCGCC 
GCGGTCTCGG CCTTCTTTGC CGCGCTGTGG GCCATGCGCC GGCGCGAGAC GGCCTATGGC 
TGGTTCGCGC TGATGTCGGT GCTGTGGCTC CTGTTCGGCT ACAACCAGAT CGCCACCAGC 
CCCTGGCCCT TTGCGAGCAA CCACAGCTGG CAGGCGCTGA ACACCTCGCT GCTGCTGCTC 
TTCAGTGTGT CCTACGCCGT GTTCGCGCTG CGCTTCTGCG AGCGGCGCAT GCCGCGGCTG 
GAAGGCCTTG CGCTGCTGGT CGCGGTGGCC GGCGTGCTCG ACCTGTGGCT CGCCGGCTCC 
GCCAACCTGC TCGCTCACCG CGCCGTCTGG ACGCTGGTGG GCGGCCTCAC GATCATCGCG 
GTGAACAGCG CCGCGCTGAT CCATGCCTTG CGCCATCGCC GCAGCCCGAT GCGCTCGCTC 
GCGCCCTTCA TGGCCCTGTC GGCGGCAACG GGCGCGCACG ACCTGCTGGT GTTCACGCAG 
GTGATCGACA GCAACATCTA CTACACGACC ATGTCCTCGT ATGGCCTGCT GCTGGGCATG 
GCGCTGACGC AGGCCGGGCG CTTCGTGCAG AGCCTGAAGC GCATCGAGAA CTTCAACACC 
GAGCTGATCG AGGAAGTGAA CGCGGCCAAG GCCGAACTCG GCGTCACGCT GACGCAGCAG 
CATGCGCTCG AGCTGGCGCA TGCGCGCATC GGCGAGCGGG TGAACCTCGC GAGCGACCTG 
CACGACGGGC TGGGCGGCAT GCTGGTCGGC AGCATCGCAA CGCTCGAACG CAAACCCGAG 
AAACTCTCCG CGCCCGAACT GCTCGCCATG CTCAAGCGCT TGCGCGACGA CCTGCGGCTG 
ATCATCGAGG CCGCGGGCCA GCACGACGGG GCGCGTGCAT TCGGCGAGCT GCTCGCGCCC 
TTGCGCCATC GCACCTCGCA GCTGCTCGAC GCGAACGGCA TCGACTGCCG CTGGCAGGTA 
TCGAACATCG AGACGCTCGA GCTGCCGCCG TCGCAGAGCC TGGATCTGCT GCGCTTCCTG 
CAGGAGGCGT TGACCAACGT GCTCAAGCAC AGCGCAAGCC GCCGCGTCGA CGTGGCGGTG 
ACGCGCACCG GCGCCGAACT GCAGCTCAGC GTGCGCGACG ACGGCCGCGG CTTCGTGGTG 
GACGGCGCCG ACAAGGGCGC CGGCGCGGGC TTGCGCAGCC TGCGCACGCG CGCACGCCGC 
CTGGGGGCCG AACTGCAGCT GCAATCGCGC CCCGGCCAGA CGCAACTGGC GCTGCGCATG 
CCGCTGGCAG CGGCGTCTTG A 

 

Protein sequence

MRSRQPASPA QALLAALMGA LLFFLLVSIP ATTLAQQPPP PEFHVEAVRS TGWNETSPPT 
DGWTRVTLPD SWAERWPGFD GVVWYRLTWD QPAEVTEVGL LLHYLNMAGA VSLNGTPIWR 
DQSLVEPLTR AWNSPRYWLL APPLLQAGRN TLLVRVSGLS AYQAGLGPVS LGAPAAMQAE 
YGQERVWRRD LQMLGLAVSA AVSAFFAALW AMRRRETAYG WFALMSVLWL LFGYNQIATS 
PWPFASNHSW QALNTSLLLL FSVSYAVFAL RFCERRMPRL EGLALLVAVA GVLDLWLAGS 
ANLLAHRAVW TLVGGLTIIA VNSAALIHAL RHRRSPMRSL APFMALSAAT GAHDLLVFTQ 
VIDSNIYYTT MSSYGLLLGM ALTQAGRFVQ SLKRIENFNT ELIEEVNAAK AELGVTLTQQ 
HALELAHARI GERVNLASDL HDGLGGMLVG SIATLERKPE KLSAPELLAM LKRLRDDLRL 
IIEAAGQHDG ARAFGELLAP LRHRTSQLLD ANGIDCRWQV SNIETLELPP SQSLDLLRFL 
QEALTNVLKH SASRRVDVAV TRTGAELQLS VRDDGRGFVV DGADKGAGAG LRSLRTRARR 
LGAELQLQSR PGQTQLALRM PLAAAS