| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3593 |
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| Symbol | |
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| ID | 7970668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3796184 |
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| End bp | 3798412 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794178 |
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| Product | YadA domain protein |
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| Protein accession | YP_002945476 |
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| Protein GI | 239816566 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.50488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATCC GGATCCACGC GCAGCTGCTG GCGATTGCCT TGTCTTTCGC GGGAAGCGCA
CATGCCGCCG GCTATGCGGC CGGTGGCGCG GGCAACGCAG GCCCCGCCCA ACCCGGCTGG
TCGTCGAGCG CCGGCGGCGG TGCGGCTACG GTCTCAGGAG ACGGTTCCAC TGCGATCGGC
GCGGGTGGCG ATGGCAGCAA CGGAACTGCT GGCGGAACAG GTGGAACGGG CGGCGTTGGC
GCCAGTGCGA CCGCGAATGG TTCGACGGCC ATCGGGGGCG GCGGAACCGC GGGGCAAGGT
AGGGCGGGCG GCACGGGCGG GGCAGGGGGA AGCGGCGCCC AGGCCACGTC TTCCGGCGCC
ATTGCCGTCG GCGCTGGCGG CGCTGGCGTT GACGGTTGCT GCGGCTTCCC CGGCCGCGCC
GGCGGCAGCG GCGCGCAGGC CACGGGCAAC TCGGCGGTCG CCATCGGGAG CGCCTCTGGC
ACCAGCCAGG GCGCAGTGGC GTCCGGCAAT GGCAGCACGG CGATCGGCGG CGCGAACGGT
GGCGCTTCGG GCGCGGCGGC GCTTGCGACA GGCGGTGTGG CGATCGGCTC GGGCAGTCGG
GTCGAAAGCG GCGCGAGCGG CAGCGTGGCC ATCGGCGCGA ATTCCGTCGC CACGGCGGCC
AACACGGTGT CCTTCGGGTC CACCGGCCAG ACGCGCGGCC TGGTCAACGT CAGCGCCGGA
TCGGTGAACT CCACGAGCAC CGACGCTGTC AACGGCAGCC AGCTGTACGC CGTGCAGAGT
GCTGCAGAAG TGGCTCGAGC AACTGCGAGC GGCGCAATGG GCCGGGCGAT GATTGCTGAA
CTTGATGCGA CGCGAGCCCA AGACACGGCG AATACCGCAC AGACCACGGC CGTTGGCGCT
CAAGGCACGG CAAATACTGC GCTCGCGAAT GCGGCCACTG CGCAGACCAC AGCCAACGGC
GCCCAGACCA CGGCGGCTAC TGCCCAGGGC ACAGCAAACA CTGCCCTTGC CAACGCAGGC
ACCGCGCAGA CCACGGCCGT TGCCGCCCAG GGCACGGCAA ATACTGCGCT CGCGAATGCG
GCCACCGCGC AGACCACGGC CAACGGCGCC CAGACCGCGG CGGCTACTGC GCAGGGCACA
GCAAATACCG CGCTCGCCAA CGCAGGCACC GCGCAGACCA CGGCCGTTGC CGCCCAGGGC
ACGGCAAATA CTGCGCTCGC GAATGCGGCC ACTGCTCAGG CCACGGCCAA CGGTGCCCAG
ACCGCGGCGG CTGCCGCCCA GGGCACGGCG AACACCGCCC TGGGCGTGGC CAACAACTCG
GTCCAGTACG GCCCGGGCGG TACGAGCGTC AGCCTGAACG CCAACGACGG CGCGGGAACC
ACGCTCAACA ACGTGCGCGC CGGCACCGCC GCAACGGATG CCGCCAACGT CGGGCAGGTC
CAGCAGGCGG AGCAAGGCGC CGTCACGGCC TCCAACAGCT TCACGATGCA GCAGGTGACT
GCCCTGCAGA GCGTCATGAA CCAGGCCCTT GCCAACGGCC TGTGCAGCTT CAGCGGGGGC
AGCGTGACCT GCGGCACGGG CAGCAAGGCC ACCGGCGCGG GTGCCACGGC CATGGGCACC
AACGCCATTG CCGATGGCGA GGGCACCACC GCGCTGGGCA GCGGCGCCGA GGCCCGCCAT
GCCGGCTCGG TGGCCATCGG CGCCGGCGCC AAGGCGCTGG CCGATCCCGC CACGGCCGTG
GGCAACAACG CGGTGGCCAC CGGCAACAAC GCGGTGGCGC TGGGCGCCAA CACGCTGGCC
TCGGGCAGCA ATGCGGTGGC GTTGGGCCAG GGGTCGGTGG CGGACCGCGA CAACACCGTG
TCGGTGGGCA ACGCGGCCAC CGGGCAGTTG CGCGGCATCG CGAATGTCGC TCCCGGCGTG
CTGGGCACCG ATGCCGTCAA CGTCAACCAG CTGCAGCAGG CGGTGAGCAG CGCGACCAGC
CAGGCGAACG CCTTTGCCGC GCAGGGCGTG GCCTCGGCAC TGGCCATGCC GTCGATGCCG
GCCCTGTCGG CGGGCAAGAA ATGGATGGGT GCCGCCGTGG GCAACTACGC CGGCGCAGCG
GCCATCGGCT TTGCCTTCGG CTACCAGGTC AACGACAACC TGAACCTGGG GCTGGGGGTT
TCCACCGCCA CCAGCAGCGG CAGCAGCAAC CGCATCGCCG CCCGCGTGCA GGCCGGCTAT
TCCTGGTGA
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| Protein sequence | MSIRIHAQLL AIALSFAGSA HAAGYAAGGA GNAGPAQPGW SSSAGGGAAT VSGDGSTAIG
AGGDGSNGTA GGTGGTGGVG ASATANGSTA IGGGGTAGQG RAGGTGGAGG SGAQATSSGA
IAVGAGGAGV DGCCGFPGRA GGSGAQATGN SAVAIGSASG TSQGAVASGN GSTAIGGANG
GASGAAALAT GGVAIGSGSR VESGASGSVA IGANSVATAA NTVSFGSTGQ TRGLVNVSAG
SVNSTSTDAV NGSQLYAVQS AAEVARATAS GAMGRAMIAE LDATRAQDTA NTAQTTAVGA
QGTANTALAN AATAQTTANG AQTTAATAQG TANTALANAG TAQTTAVAAQ GTANTALANA
ATAQTTANGA QTAAATAQGT ANTALANAGT AQTTAVAAQG TANTALANAA TAQATANGAQ
TAAAAAQGTA NTALGVANNS VQYGPGGTSV SLNANDGAGT TLNNVRAGTA ATDAANVGQV
QQAEQGAVTA SNSFTMQQVT ALQSVMNQAL ANGLCSFSGG SVTCGTGSKA TGAGATAMGT
NAIADGEGTT ALGSGAEARH AGSVAIGAGA KALADPATAV GNNAVATGNN AVALGANTLA
SGSNAVALGQ GSVADRDNTV SVGNAATGQL RGIANVAPGV LGTDAVNVNQ LQQAVSSATS
QANAFAAQGV ASALAMPSMP ALSAGKKWMG AAVGNYAGAA AIGFAFGYQV NDNLNLGLGV
STATSSGSSN RIAARVQAGY SW
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