| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3580 |
|---|
| Symbol | |
|---|
| ID | 7970655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3781393 |
|---|
| End bp | 3782220 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794165 |
|---|
| Product | putative signal transduction protein |
|---|
| Protein accession | YP_002945463 |
|---|
| Protein GI | 239816553 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0283701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGG ACGAACTGTT TACCGACAGC CACTTGCTTC CCACGGTGCC CAAGGTGGTG
TTCGATCTCA TCGAGCTCCT TCGCAACGAG GACGCCGCGG TTTCCGTGGT GGCACGCAAG
ATCGAGCTCG ACCAGGTGCT GACGGCCCGC GTGCTGCGCA TGGCCAATTC GCCGTACTTC
GGGCTGCGCC GCAAGATCCT GTCGATCCAG GACGCGATCC AGCTGCTGGG CTTCTCCTCG
ATCCGCTCCC TGGTGGTGAG CTCCGGCCTC ACGGGCACCT TCCGCAAGGT CGAGGGCGTG
AACCTGCCGG CCTTCTGGTC GCACAGCCTG CGCGTGGCCG CCGTGGCCCG CTATCTCGCG
GGCAAGACGC GCCGTGTGGA CCAGAGCCTG GCCTTCACGG TCGGCAGCAT GCACGCCATC
GGCCACCTGA TCATGGCCGG CGCCATGAAG CAGCCGATGG CCGAGCTCAA CGCCGCGCAC
CCCTTCGACC GCATGGGACG GCTCGAGGTC GAACGGCAGA AGTTCGGCTT CCATTACGGC
CAGGTCGGCG CCCGGCTGGC CGCCCGCTGG GAATTCGCGC CCGAGTTCGT CAGCGCCCTG
TCCTCCTTCG CCAACCCGAT GGAGGCCGAG CAGGTCGACC CGCTCGCCAG CGTGCTGCAC
CTGGCGGTCT GGCGCGTCGC GCTGGAACGC GAAGGGCTGC GCATCGGCGA CGCGCAGCAT
GTCTGGCCGG CCCAGCCGGC GGACGCGATC GGCCTGTCCG AAGACGTGAT GCAGGACATG
CCGGCACCAC GCGAGCTGGC GTCCGACCTG GAATCGATGA TCGCCTGA
|
|---|
| Protein sequence | MTLDELFTDS HLLPTVPKVV FDLIELLRNE DAAVSVVARK IELDQVLTAR VLRMANSPYF
GLRRKILSIQ DAIQLLGFSS IRSLVVSSGL TGTFRKVEGV NLPAFWSHSL RVAAVARYLA
GKTRRVDQSL AFTVGSMHAI GHLIMAGAMK QPMAELNAAH PFDRMGRLEV ERQKFGFHYG
QVGARLAARW EFAPEFVSAL SSFANPMEAE QVDPLASVLH LAVWRVALER EGLRIGDAQH
VWPAQPADAI GLSEDVMQDM PAPRELASDL ESMIA
|
|---|
| |