Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3579 |
Symbol | |
ID | 7970654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3777679 |
End bp | 3781002 |
Gene Length | 3324 bp |
Protein Length | 1107 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794164 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002945462 |
Protein GI | 239816552 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.269581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCGT CCATCTGGGT CAGGATTCGC TTGCCGCTGG TGATTTTCGC GGCTGGCATG GTGCTGTCGA TCGCCCTCGG CGTCTCCGCC CGCCAGGAGA TCGGGCGCAG CGCCCAGGCG CGCTTCGACG CCACCGCCTT CGATCTGGCG CGCAAGGTCG AGGCCCGCTT CGATGACTAC GTTGCCGTCC TGATCGGATT GCGTGCGCGA TTCAACACCT CCGAGACCGT GACGCGAAGC GATTTCAGGG ACTACGTCGC GGGGCTGGAC CTGGCGCGCG CCTACCCCGG TTTCCAGGCC GTCAACTATG CGCCCCGCAT CACGGTCAAC GACAGGCAGG CCTTCGAGGA ACAGGTCCGC CGCGATGCCA GCCTCGACAC CGGCGTTGCC TCCAGCTTCG CCATCAAGCC GCCCGGTGAG CGGGACACGT ACTACCCGCT GATCTACATC GAACCGCAGG CCGGCAACGA GAGGCTGCTC GGCAATGACC TGGGCGCGAT GCCCGACAGG GGAGACGCGC TCGAGCAGGG GCGCGACACC GGCGGGCTCG TCACGTCCGG CCGCAAGGTC CGCATCGCGG GCCGCGAGTC CGACATCGGA TTGGCGATGC GGCTGCCGGT CTACCGCCCC GGGCAACCGC TCGATACGCT CGAACAGCGG CGCAGTGCCT ATATCGGTTC GGTCGGCTCG GGCTTCAGCG TCGCAGGGAT GTTGAGCGAC GTGGTGGGTA CCGACGCCAT GAGGACGCTC CGGTTGCGCC TGATCGATGC CGGGCCGAGC CGGGGAGCGA TCGGGACACG GGTCGAGACC AGGTTCGTGA CGACGGCCTC GTTCGGCGAA CGGCAATTGC TGTTCGACAG CGCGGCCCTG GCCAGGCCCG CTGCCGCACC TGCGCGCAGC CTGGAGCGCA TGCTCGGCTT CGAGTTGGGC GGCCACTCCT GGCTCGTGGA AGTCGGCCAG GACGAAAACC AGGTCTTCGG CCCGCTCGAC AAGGCGATCC CGTGGTTCAT CGTCCTTGGC GGCCTGGCCA CCAGCATGCT GCTTGCCGGC ATCGTCTTTT CGTTGACCAC CGCACGCAGC CGAGCCCAGA TCCTGGCGAA CGAGATGACC CGCCACCTGC GCACGAGCGA ACGGCAGCTG GAGGAGGCCC AGCACCTGGC AAGCCTGGGC AGCTGGATCC TCGATCCCGA AACCGGAGCC CTGCAGTGCT CCGAAGAAGC CCGGCGCATC CTGGGCTTCG AGGCCGGCCA CTTGCGGCCG GAGCTGCCCG CGCTGCTCTC GCGTGTTCCG GCCGCAGAAC GCCCCGCGGT CGAACAGCAG ATCGCGCAGG CCTCCCGGTC CATGGAACGC AGCGAATTCG AGCATCACCT GTGCCTGCCC GACGGCACCG AGCGCTGGCT CCACGTCATC GCGCAGTCGG CCGAAGAAGA CGGAAAGACG ATGGTGCGCG GCACCGTGCG CGACGCCACG CGGCCGCGCA AGGATGCGTT GCGCCAGGGG CTCGAATACA GGATTGCCCG GCTGCTTGCC GGCGATGGCA GGGCCGAGAC GGTGATCACC CAAGCGCTGG AAGCCCTGTG CACCGACCTG CGCTGGGACT GCGGCGCGTT GTGGAGCGTT GGCGAGGACG GCGTGGTTCG CTGCGCCGCC GCCTGGCATG CCGACCACAT TCCCCCGGCG GTGCGGCAAT TCGCCTCCGA CAGCCGGTCG TTCGAATACC GGGCCGACGA AGGCTCGCTG GGCCGCGCCT GGAAAACCGG CGGCATCGTG CAAATCGACG TGCTGGCGGC TCCGGGCCAT TTCGCGCGCG ATGCGATGGC CCGCGAGGCC GGGCTGGCCG TCGGCATCGT CGTGCCGATG GCCGTTACCG ATTCGATCAC GGCGCTGGAG CTCCTTGGCT CCAATCCGTA CGCCATCGAC GCCCAGACGC AGGAGTCGCT GCGTGTGATC GCCTTGCAGA TCGCCCAGTA CAAGCAGCGC AAGCAGGCGG AGAGAAGCCT TCGTTTCATG GCCAGCCACG ACGGACTGAC CGGCCTGTTC AACCGCGCTG CGCTGCAACA CGAGCTTGCT CGCGCCATCA AGCGCAGCAA CCGCCATCAA AAGCAGTTCG CGGTGATATT CGTCGACCTG GATCGCTTCA AGCACATCAA CGACACGCTG GGCCACGGCG TGGGCGACGA GATGATCAAG ATCTGCGGCG AGCGCCTCAC GGCGCTGCTG CGCGAGGCGG ATGTCGTGGC GCGTTTCGGT GGCGATGAGT TCGTGCTGCT CCTGGAGAAC CTGTCCAGCG CAAACGATGC CGCGGGGCTC GCCGAAAAAG TGCTGGCCTG CTGCGCCGAG CCTTTCTTCC TCGCGGGGCG CGAACTGCAC GTCAGCGCCA GCGTCGGCGT GAGCATCTAT CCGGACAACG GCGCAGACGC CGAAGCGCTC TTGAAAAATG CCGATACGGC GATGTACCGG GCCAAGGAAA GAGGCCGCAA CACCTTCCGG TTCTACGCCG CGAAGATGAA TGCGCAGAAT ACCGAACAGC TGATGCTCGA AAGCGCGCTG CGCCATGCCT TGGAGCGTGG CGAGCTCGAA ATGCACTACC AGCCGAAGAT GGATCTGCAG ACCCAGCGCA TCGTCGGTGT CGAGGCGCTG ATGCGCTGGC ACCATCCGAT CCTGGGCATG ATCCCGCCGG TGCAGTTCAT TCCAATCGCC GAAGAACTCG GCCTGATCGT GTCCTTGGGC AAATGGGCGC TGGAGAGGGC TTGCGCCGAT TCGCGTTCGT GGCAGAAATA CGGTTTGCCG AAGGTGTTGA TGAGCGTCAA TCTATCGCCG CGCCAATTCG AAAGCCGCAC GCTCATCGCC GACATCCAGG CTGTCCTGGA AGCCTCGGGG CTGGAGCCGT CGCTGCTGGA GCTGGAGATC ACCGAAGGCG CGGTGATGGC GAATCCCGAG CATGCGGCGA AGTTGCTCAG GGCGATCCGG GACATGGGCG TCGGCCTTGC GATCGACGAT TTCGGAACGG GCTATTCCTC GCTCTCCTAC CTCAAGCACT TCCCGCTGTC GACGGTCAAG ATCGACCGCT CCTTCATCAA CGACCTGTCG CAGGACGCCG ACGCGCGGGC GCTCATCGAC GGCATCATCA CCCTGGCCCA CGGGCTGCGG ATGAAAGTGG TCGCCGAGGG CATCGAGACC ACGGCCCAGC TCGATTACCT GCGCAGCCAC GGTTGCGACG AGGCCCAGGG CTATTGGCTG TGCAAGCCCG TGCCTGCCGA CGAGGTGCGC AATTTCATGG CGCGCCACCT GCGCAACCAG TTTGCTCCAT CGGAGGCGGC CTGA
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Protein sequence | MSSSIWVRIR LPLVIFAAGM VLSIALGVSA RQEIGRSAQA RFDATAFDLA RKVEARFDDY VAVLIGLRAR FNTSETVTRS DFRDYVAGLD LARAYPGFQA VNYAPRITVN DRQAFEEQVR RDASLDTGVA SSFAIKPPGE RDTYYPLIYI EPQAGNERLL GNDLGAMPDR GDALEQGRDT GGLVTSGRKV RIAGRESDIG LAMRLPVYRP GQPLDTLEQR RSAYIGSVGS GFSVAGMLSD VVGTDAMRTL RLRLIDAGPS RGAIGTRVET RFVTTASFGE RQLLFDSAAL ARPAAAPARS LERMLGFELG GHSWLVEVGQ DENQVFGPLD KAIPWFIVLG GLATSMLLAG IVFSLTTARS RAQILANEMT RHLRTSERQL EEAQHLASLG SWILDPETGA LQCSEEARRI LGFEAGHLRP ELPALLSRVP AAERPAVEQQ IAQASRSMER SEFEHHLCLP DGTERWLHVI AQSAEEDGKT MVRGTVRDAT RPRKDALRQG LEYRIARLLA GDGRAETVIT QALEALCTDL RWDCGALWSV GEDGVVRCAA AWHADHIPPA VRQFASDSRS FEYRADEGSL GRAWKTGGIV QIDVLAAPGH FARDAMAREA GLAVGIVVPM AVTDSITALE LLGSNPYAID AQTQESLRVI ALQIAQYKQR KQAERSLRFM ASHDGLTGLF NRAALQHELA RAIKRSNRHQ KQFAVIFVDL DRFKHINDTL GHGVGDEMIK ICGERLTALL READVVARFG GDEFVLLLEN LSSANDAAGL AEKVLACCAE PFFLAGRELH VSASVGVSIY PDNGADAEAL LKNADTAMYR AKERGRNTFR FYAAKMNAQN TEQLMLESAL RHALERGELE MHYQPKMDLQ TQRIVGVEAL MRWHHPILGM IPPVQFIPIA EELGLIVSLG KWALERACAD SRSWQKYGLP KVLMSVNLSP RQFESRTLIA DIQAVLEASG LEPSLLELEI TEGAVMANPE HAAKLLRAIR DMGVGLAIDD FGTGYSSLSY LKHFPLSTVK IDRSFINDLS QDADARALID GIITLAHGLR MKVVAEGIET TAQLDYLRSH GCDEAQGYWL CKPVPADEVR NFMARHLRNQ FAPSEAA
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