| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3568 |
|---|
| Symbol | |
|---|
| ID | 7970643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3767399 |
|---|
| End bp | 3768460 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794153 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002945451 |
|---|
| Protein GI | 239816541 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.492229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG AGATACTTGC CCACCCCTGG TTCGGCACCT GGATTGCCGT TCTCGTCGCC
GTCCCGCTCG CTCTCCTGGT CCACCGCATC GGCGGCCTTG TGCTGAAACG CATCACCCGC
CCCGCGCCCG CGGTGCACGC GATGGTGGTC AACTGCAACG CACCGGCGCG GCTGGTGCTG
CCGCTGGTGG CGCTGCTGCT CATCTTCCAG GCCGCGCCCG AGGACCTGCG CTTCCTTGGC
AGCGTGCGGC ATTTCAACGG CCTGCTGCTG ATCGCCGCGA CCACCTGGCT CGCGGTGCGG
GCCATCAGCG GCTTTGCCGA CGGCGTACTC GCGCAGCATC CCTCCGACGT TGCCGACAAC
CTGCAGGCGC GCCGCGTGCT CACGCAGACG CGCGTGCTCG CGCGCACGGC CATGTCGGTG
GTGCTGGTGG CCGGCGGCGC GATGATGCTC ATGACCTTTC CGGGCGCGCG CCAGGTGGGT
GCGAGCCTGC TGGCCTCCGC GGGGGTGATC GGCATCGTGG CGGGCCTCGC GGCCAAGCCG
GTGTTCAGCA ACCTGATCGC CGGGCTGCAG ATCGCGCTGG CCCAGCCGAT CCGCATCGAC
GACGTGCTGG TGGTCGAGGG CGAATGGGGC CGCGTCGAGG AGATCACGGG CACCTTCGTG
GTGCTCAAGA TCTGGGACGA CCGGCGCCTG ATCCTGCCGC TCAGCTACTT CATCGAGAAG
CCGTTCCAGA ACTGGACGCG CCATTCCTCG CAGCTGCTGG GCTCCGTCTT CGTCTACGTC
GACTACGGCA TGCCGCTCGC GCCGCTGCGC GAAGAGGTCG AGCGCATCGT GAAGGCGGCG
CCCGAATGGG ACGGCCGCTT CTTCAACATG CGCGTGACCG ACGCCACCGA GCGCAGCATG
CAGGTTCGCG TGCTGTGCAC CGCCGCCACA TCGGGCCTGG CCTTCGACCT GCGCTGCACC
GTGCGCGAAG GGCTCCTCGA CTTCATGCAG CGCGAGTACC CGCAGTTCCT GCCGAAGATG
CGCATCGAGG CCGATCCGCT CCAGGGCGCG GCGGCGGCCT GA
|
|---|
| Protein sequence | MTQEILAHPW FGTWIAVLVA VPLALLVHRI GGLVLKRITR PAPAVHAMVV NCNAPARLVL
PLVALLLIFQ AAPEDLRFLG SVRHFNGLLL IAATTWLAVR AISGFADGVL AQHPSDVADN
LQARRVLTQT RVLARTAMSV VLVAGGAMML MTFPGARQVG ASLLASAGVI GIVAGLAAKP
VFSNLIAGLQ IALAQPIRID DVLVVEGEWG RVEEITGTFV VLKIWDDRRL ILPLSYFIEK
PFQNWTRHSS QLLGSVFVYV DYGMPLAPLR EEVERIVKAA PEWDGRFFNM RVTDATERSM
QVRVLCTAAT SGLAFDLRCT VREGLLDFMQ REYPQFLPKM RIEADPLQGA AAA
|
|---|
| |