| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3567 |
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| Symbol | |
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| ID | 7970642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3765159 |
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| End bp | 3767399 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794152 |
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| Product | protein of unknown function DUF893 YccS/YhfK |
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| Protein accession | YP_002945450 |
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| Protein GI | 239816540 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.429203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGGGC CAGGCGCCGC CCTCCGCTTC CGTGCGGCGC TGCGCATTGC GCTGAGCCAG
TACGTCGCCA GCGGCCTCAC CGTCGCGCTC GGCCTGCTCG TGATCTCGGC CGGCGCGCAC
CTGTGGCTCG GCGCCGTCGC GGCCTCGGCC GCCGCGGTGG GCGTGATCGT CACGGCCCCG
CCCGACCTGC CCGGCCCGCG CCGCGGCAAG TTCTTCCAGA TGCTGCCGGC CCCGCTGATC
GGGCTGCCGC TGTTCTTCCT GGTGCAGCTG CTGCACGCCG CGCCCATCCG CCTGGGCCTG
GTGCTGGTGC CCGCCACCTT CGTCGCCTTC CTGGCGATGG CATGGGGCAA GCGCGGCATC
CCCATTGCCA TCGCGGTGAT GTTCTCGATG ATCTTCTCGA TGGCCACGCC CGCACCCAGC
GGCATGGCCG AGGCGCTCGA GCGCACCTGG CACTTCGGCA TCGGCGCCGG GCTCTACGTG
ATCTGGGCCA CGCTCGCCAA CCATGCGCTG AATTCGCGCT TTCGCGTGCA GTCGGTCTCG
GACGTGCTGT ATTCGCTGGC CGCGCTGATG CGCACCGAGG CCAGCCAGTT CACGCCGCGC
GACGACACCA GCGACATCCG CGAAACCCCC GCGCCTTTGC TGGGCCGGCT GCTGCGCGAA
CAGGCCGCGC TGGCCGACCA GCTGCAGGCC ACGCGCGACA TCGTGCTCGA ATCGCCGCGC
ACCCCGCGCC GGCAGCGGCT GGCCGCCATG CTGGTGATCG TGCTCGAGAT GCGCGACCAG
CTGCTCGCGA GCGAGCTCGA CCTGGACGCG CTCAAGAGCC ATCCCGCGCA CGCCGAGGCG
CTCATCGAGA TGCGCCGCGT GCTCGAGGAG CTGGCCGACG ACACCACCGC GCTCGGCGAC
GCGCTGCTGA TGGGCCGCCA GCCCGAGGCG GTGGCCGACC GGCGGCCGCG GCTCGCGTCG
ATCCATCTTT CGGGCGAAGA CCACATCGCC AGCCACGGCC TGCCGGGCCC GAACGCCGCC
ATGCTCGCGC GCGGCCTGGC CAGCCGCATC GGCCACATCA ACGACGAGGT GCTGCGCCTG
TCGGCCATGG CGCGCGGCGA TGCCGAGCCC AATCTTGCGG TGGTGCGCGC CAACTGGCAG
ATGTTCGTGA GCCCGACCGA CTGGTCGCTG CGGCCCTTTC TCGCGCTGTG GCGCTGGGAC
GCGCCGCCGC TGCGCCACGC GATTCGCGCG GCCCTGGCCA TTGCGGCCGG CTACACGATT
GCGGTGTCGC TGCCCTGGGG TTCGCACGAC TACTGGATCC TGCTGACCAT CGTGGTGGTG
CTGCGCGGCA GCCTTTCGCA GACGCTGGAA CGGCGCAACA GCCGCGTCGC CGGCACGCTG
CTGGGCAGCG TGCTCGCGGT GGGCCTGCTC TCGGCGCATC CGTCGCCGCT CGCGCTGCTG
GTCATCCTCA CGGTGGCGCA GGCCATTGCC CACAGCTTTG CGGTGCGGCG CTACCTGATC
ACGGCGGTGG CGGCCACGGT GCTGGGCCTG GTGCAGGCGC ACATGCTCAA CGTGGGCGCC
GCGCCCATCT TCGCGCTGTT CGAGCGCATT GCCGACACGC TGATCGGCGC CGCGCTGGCC
TGGGGCTTCT GCTATGTGCT GCCCTCGTGG GAGCGCGGGC AGATTCCGGC GCTGGTGGCG
CGCACGCTCA CCGCGCAGGC GCGCCATGCA CGGCTGGCGC TCGGCCTCGG CCAGCTGCAG
GCCGTCGACA GCAGCCCCGA GCTCGAATGG CGGCTCGCGC GCCGCGAGGC CTACGACAGC
CTCTCGGCGC TGGTGCAGGC CACGCAGCGT TCGCTGTCGG AGCCGCGCGC GGTGCAGCCG
CCGCTCGAGC CGCTCGAACA CCTGCAGGCG CACAGCTATC AGCTGCTCGC GCAGCTCAGC
GCCGTCAAGT CGATGCTGGT GCTCAGGCGC GACCGGCTCA CGGCCGCCGA GATCGAAGGC
CCGCTCGCGC GCACCGCGCA GCGCATCGAG GCCGCCATCG GCAGCGCGCC GACCACCGGC
CCCTCGCTCC CTGAAAGCAC CGGCTCCACC ACCGTGGGCG GCCCGATTCC CCTGCCCGAC
CCGTTCGACA ACGACATCAG CCCCTGGCTG CTGCGCCGGC TCGACCTGGC CACGGCACTC
TCGACGCAGC TGCGCGACGA CGCGGCGCGC ATCCTTCAAC ACCTGGACGA GACAACAGAA
GCAGCCACGA CCCCCGCCTG A
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| Protein sequence | MQGPGAALRF RAALRIALSQ YVASGLTVAL GLLVISAGAH LWLGAVAASA AAVGVIVTAP
PDLPGPRRGK FFQMLPAPLI GLPLFFLVQL LHAAPIRLGL VLVPATFVAF LAMAWGKRGI
PIAIAVMFSM IFSMATPAPS GMAEALERTW HFGIGAGLYV IWATLANHAL NSRFRVQSVS
DVLYSLAALM RTEASQFTPR DDTSDIRETP APLLGRLLRE QAALADQLQA TRDIVLESPR
TPRRQRLAAM LVIVLEMRDQ LLASELDLDA LKSHPAHAEA LIEMRRVLEE LADDTTALGD
ALLMGRQPEA VADRRPRLAS IHLSGEDHIA SHGLPGPNAA MLARGLASRI GHINDEVLRL
SAMARGDAEP NLAVVRANWQ MFVSPTDWSL RPFLALWRWD APPLRHAIRA ALAIAAGYTI
AVSLPWGSHD YWILLTIVVV LRGSLSQTLE RRNSRVAGTL LGSVLAVGLL SAHPSPLALL
VILTVAQAIA HSFAVRRYLI TAVAATVLGL VQAHMLNVGA APIFALFERI ADTLIGAALA
WGFCYVLPSW ERGQIPALVA RTLTAQARHA RLALGLGQLQ AVDSSPELEW RLARREAYDS
LSALVQATQR SLSEPRAVQP PLEPLEHLQA HSYQLLAQLS AVKSMLVLRR DRLTAAEIEG
PLARTAQRIE AAIGSAPTTG PSLPESTGST TVGGPIPLPD PFDNDISPWL LRRLDLATAL
STQLRDDAAR ILQHLDETTE AATTPA
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