| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3565 |
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| Symbol | |
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| ID | 7970640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3763245 |
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| End bp | 3763976 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794150 |
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| Product | RNA methyltransferase, TrmH family, group 1 |
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| Protein accession | YP_002945448 |
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| Protein GI | 239816538 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0565] rRNA methylase |
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| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACCC GTTTCATCCT GATCCAGACC AGCCACGCCG GCAATGTGGG CGCCGCCGCC
CGCGCCATGA AAACCATGGG TTTCGACGAC CTGGTGCTGG TCGCGCCAAG GTGGGCCAAC
GTGCTGCGGC GCGAGGAAAC CATCCAGCGC GCAAGCGGCG CCCTCGACGT GCTGACCAAT
GCCCGCATCG TCGAAACGCT CGACGAGGCG CTCGACGGCG TCACCCACCT GTGCGCCACC
GCCATGATCC CGCGCGACTT CGGCCCGCCC ACGCGCACGC CGCGCGAGCA CCTGGAGCCG
CTCGCCAAGC AGGGCGAGCA GCACGTGGCC TTCCTGTTCG GCTCCGAGCG CTTCGGCATG
CGCAACGAAG ACGTCTACCG CTGCAACGTG GCGCTGAGCA TCCCGACCGA TCCGAAGTTC
GGCTCGCTCA ACCTTGGGGC CGCGATCCAG GTGGTGGCCT ACGAATGGCG GCTTGCGCTG
GGCGGCTACG AGGTGCGCGA TGCCACCGCG CCCATCGAGG CGGCCGACGC CAAGGCGGTG
GCCGGCATGC TCGAGCACTG GGAGCGTTCG CTGGTGGAGA TCGGCTTTCT GGACCCGGCG
GCGCCCAAGA AGCTGATGCC GCGGCTGCAG CAGCTGTTCA ACCGCGCCCA GCCCACGCCG
GAGGAGATCC ACATCCTGCG CGGCATCGCC AAGGCCATGG CCGATGCGGC GCGCGGACCG
CGCAAGGGCT GA
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| Protein sequence | MRTRFILIQT SHAGNVGAAA RAMKTMGFDD LVLVAPRWAN VLRREETIQR ASGALDVLTN
ARIVETLDEA LDGVTHLCAT AMIPRDFGPP TRTPREHLEP LAKQGEQHVA FLFGSERFGM
RNEDVYRCNV ALSIPTDPKF GSLNLGAAIQ VVAYEWRLAL GGYEVRDATA PIEAADAKAV
AGMLEHWERS LVEIGFLDPA APKKLMPRLQ QLFNRAQPTP EEIHILRGIA KAMADAARGP
RKG
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