| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3560 |
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| Symbol | |
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| ID | 7972186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3756698 |
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| End bp | 3758032 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794145 |
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| Product | heavy metal sensor signal transduction histidine kinase |
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| Protein accession | YP_002945443 |
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| Protein GI | 239816533 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR01386] heavy metal sensor kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0861327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCCCGG CACGGCCGCA CTCGATCCGC AACCGGCTCA CCTCCTGGTT TGCCGCGCAG
GCCTTCTTCT GCCTGAGCGT GGCCTGTCTC GCGGTCTACC TGGTGACGGC GTGGAGCTTC
GGCGAAAAGC AGGACGGCGA GCTCGAGCAC AAGGCGCAGC TGGTGCGGCA CCTGCTCGAG
GAAGGCGAGA AGGACGGCGA CCTTTCCTTC CTGCGCCACA AGCTCGAGGA CTTCTTCTCG
CTGCAGGACG ACGTGCGCCT GTCGATCGCG CGGCAGTCCG ACGGCAGCGT GTTCTTCCGC
TCCGAGCCGC CCGCAGGCGG GCGTTGGCTC CAGCGCGACT TCGTGCACAC ATGGGGCGGC
CAGGCGGGCG GCGGCACGCC GCTTTCGATC CGCATCGGCA TCGACGTGGC ACGGGACGTG
GTGCTGCTGC GCCGCCTTGC ATGGACGCTG CTGGCGGCCG CCGTGCTGGG CACGCTGCTG
GTCTCGCTGA CCGGCGCGCA GCTGGTGCGG CGCGGGCTGC GGCCACTGGA AGCGCTGGCC
GGGCGCACCG CGGCGCTGAC GCCGGACCAC ATCAACCAGC CCATCGACGC CTCGGCGTTC
GCGCGCGAAC TGCACCCGTG GATCACGCAG TTCAATGCCC TGCTCCTGCG CGTGCAGAAG
GCCTATGTGC AGCTCGAATC GTTCAATGCC GACGTCGCGC ACGAGCTGCG CACACCGCTC
GCCAACCTGA TCGGCACCAC CGAGCTCGCG CTGTCGCGCC CGCGGCCGAA CGACGAGCTG
CAGGCCGTCC TGGCCTCCAA TCTCGAGGAG GTCGGCAGGC TCTCGGGCAT CGTCACCGAC
ATGCTCTTTC TCTCGCAGGC CGAGCGCGGT GCGCCGCTGC GCGTGAAGGC CGGCACCAGC
CTGGCCGCGC AGGCGCGCGA CGTGATCGAC TTCCACGAAG CGATGCTCGA GGAAGCCGGG
CTCCGCGCCA CGGTCACCGG CGAGGCCGTG GCCGACGTCG ATGCCTCCCT GGTGCGGCGT
GCGCTTTCCA ACCTGCTGGG CAATGCGATC CGCTTCGCGG CGCCGGCGTC CTGCATCGGC
ATCGAGATCG GCACGGAACC GAACGAGGCC ACGCTCACCG TCGTGAATCG CGGCGAACCG
ATTGCGGCCG AGACGCTGCC GCGCCTGTTC GAGCGCTTCT ACCGCGCCGA TCCCGCACGG
GACCGGTCGG CGCGCCACCA CGGCCTGGGG CTCTCGATCG TGGAGGCCAT TGCGCGCATG
CATGGCGGGC GCGTGTTCGC CTCCAGTGCG AACGGCGAAA CCCGCATCGG CTTCGCGGTG
CCGCTCGCGC GCTGA
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| Protein sequence | MSPARPHSIR NRLTSWFAAQ AFFCLSVACL AVYLVTAWSF GEKQDGELEH KAQLVRHLLE
EGEKDGDLSF LRHKLEDFFS LQDDVRLSIA RQSDGSVFFR SEPPAGGRWL QRDFVHTWGG
QAGGGTPLSI RIGIDVARDV VLLRRLAWTL LAAAVLGTLL VSLTGAQLVR RGLRPLEALA
GRTAALTPDH INQPIDASAF ARELHPWITQ FNALLLRVQK AYVQLESFNA DVAHELRTPL
ANLIGTTELA LSRPRPNDEL QAVLASNLEE VGRLSGIVTD MLFLSQAERG APLRVKAGTS
LAAQARDVID FHEAMLEEAG LRATVTGEAV ADVDASLVRR ALSNLLGNAI RFAAPASCIG
IEIGTEPNEA TLTVVNRGEP IAAETLPRLF ERFYRADPAR DRSARHHGLG LSIVEAIARM
HGGRVFASSA NGETRIGFAV PLAR
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