| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3559 |
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| Symbol | |
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| ID | 7972185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3756024 |
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| End bp | 3756701 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794144 |
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| Product | two component heavy metal response transcriptional regulator, winged helix family |
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| Protein accession | YP_002945442 |
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| Protein GI | 239816532 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.710681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATTC TGGTCATTGA AGACGAGCCC AAGCTGGGCG ACTACCTGAA GAAGGGCCTG
GAAGAGAACG GCTACGTGGT CGACATCGCG CGCGACGGCA TCGAAGGCCG CTACCTCGCC
ACCGAGGGCG ACTACGCGCT GATCCTGCTC GACGTGATGC TCCCCGGCAT CGACGGCTTC
GCGGTGCTGC AGGCGATCCG GCGCACCAGC AACGTGCCCG TGCTGGTGCT CACCGCGCGC
GACAAGGTCG AGGACCGGGT CAACGGCCTG CAGCAAGGCG CCGACGACTA CCTCGTCAAG
CCCTTTTCCT TTTCCGAGCT GCTGGCGCGC ATCCAGGCGC TGCTGCGCCG CGGCAAGCCG
CAGGAGTCCA CCGTGCTGCG GCTGGCCGAC CTGGAGCTCG ACCTGGCCAG CCGCAAGTGC
TTTCGCAACC GCACGCGGCT GGACCTCACG GCCAAGGAGT TCACGCTGCT GGTGGTGCTG
CTGCGCCGCC GCGGGCAGAT ACTTTCGCGC AGCACGCTCG CCGAGCAGGT GTGGGAGATG
AACTTCGACA GCGACACCAA CGTGGTCGAG GTGGCCATCC GCCGCCTGCG CAGCAAGATC
GACGACCCGT TCGAGGTCAA GCTGCTGCAC ACGGTGCGCG GCATGGGCTA CGTGCTCGAG
GATCGTTCCT GGTCGTGA
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| Protein sequence | MRILVIEDEP KLGDYLKKGL EENGYVVDIA RDGIEGRYLA TEGDYALILL DVMLPGIDGF
AVLQAIRRTS NVPVLVLTAR DKVEDRVNGL QQGADDYLVK PFSFSELLAR IQALLRRGKP
QESTVLRLAD LELDLASRKC FRNRTRLDLT AKEFTLLVVL LRRRGQILSR STLAEQVWEM
NFDSDTNVVE VAIRRLRSKI DDPFEVKLLH TVRGMGYVLE DRSWS
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