| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3555 |
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| Symbol | |
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| ID | 7972181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3749538 |
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| End bp | 3752726 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794140 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_002945438 |
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| Protein GI | 239816528 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGAAC GAGTCATCCG GTTTTCCATC GAGCAGCGCT GGCTGGTGCT GCTGGCCGTG
CTGGGCATGG CGACGCTCGG CGTCTTCAGC TACCAGAAGC TGCCGATCGA CGCGGTGCCA
GACATCACCA ACGTACAGGT GCAGATCAAC ACCGCCGCGC CCGGCTATTC GCCGCTCGAG
GCCGAGCAGC GCGTGACCTA TCCCATCGAG ACGGTGATGG CCGGCCTGCC GGGGCTGCAG
CAGACCCGGT CGCTCTCGCG CTACGGCCTG TCGCAGGTGA CGGTGATCTT CGAAGACGGC
ACCGACATCT ACTTTGCGCG ACAGCTCGTG AACGAGCGCA TCCAGTCGGC GCGCGGGAGC
ATGCCCAGCG GCATCTCGCC GGTGATCGGG CCGATATCGA CCGGGCTCGG CGAAATCTAT
CTCTGGACCG TGGAGGCCGA GGAGGGCGCG AAGAAAGCCG ACGGCAAGCC CTACACGTCC
ACCGACCTGC GCGAGATCCA GGACTGGATC ATCAAGCCGC AGCTGCGCAA CGTGAAGGGC
GTGACCGAGA TCAATTCCAT CGGCGGCCAT GCCAAGGAGT TCCAGATCGC GCCCGACCCC
GCCAAGCTGC TGGCGCACGG CCTCTCGATG GCCGACCTGG TCAGCGCACT GGAGCGCAAC
AACGCCAACG TGGGCGCGGG CTACATCGAG AAGCGCGGCG AGCAGTACCT GATCCGCGCG
CCGGGCCAGG TCAAGTCGGT GGAGGACATC GGCAACGTGA TCCTCGCGAG CTCCAGCGCG
AGCGCGGCCG GCATGCCGCT GCGCGTGCGC GACGTGGCCG AGGTCGGCAT CGGCCAGGAG
CTGCGCACGG GCGCTGCCAC CGACAACGGC CGCGAGGTGG TGCTGGGCAC GGTGTTCATG
CTGATCGGCG AGAACAGCCG CACCGTCTCG CAGGAGGTCG ATAAAAAAAT GCAGCAGATC
AACCGCACGC TGCCCGCGGG CGTGAAGGCC GTCACCGTGT ACGACCGCAC GGTGCTGGTC
GACAAGGCCA TTGCCACGGT GAAGAAGAAC CTGTTCGAAG GCGCGGTGCT GGTGATTGCG
GTGCTGTTCC TGTTCCTCGG CAACATGCGC GCGGCGCTGA TCACCGCGCT GGTGATTCCG
CTGTCGATGC TCTTCACCTT CACCGGCATG GTGAACCAGA AGGTCAGCGC CAACCTCATG
AGCCTGGGCG CGCTGGACTT CGGCATCATC ATCGACGGCG CGGTGGTGAT CGTGGAGAAC
TGCGTGCGGC GCCTCGCGCA TGCGCAGGCC AGGCACGGGC GGGCACTGAC GCGCAGCGAG
CGCTTCCACG AGGTGTTCGC GGCCTCGCAG GAGGCGCGGC GGCCGCTGCT GTTCGGCCAG
CTGATCATCA TGGTCGTGTA CCTGCCGATC TTTGCGCTCG CGGGCGTGGA GGGCAAGCTG
TTCCACCCGA TGGCCTTCAC CGTGGTGATT GCGCTGCTGG GCGCGATGAT CCTGTCGATC
ACCTTCATTC CCGCGGCCGT GGCGCTCTTC ATCGGCCACA AGGTGAGCGA GAAGGAGAAC
CGCCTGATGC AGTGGGCCCG GTGCGGCTAC GAGCCGCTGC TGGCGCGCGC GATGGCGGCC
AGGCCGCTGG TCATCACCAC GGCGGTGGTG GCGGTGCTGC TCTCGGGCCT GCTGGCGACG
CGCCTGGGCA CGGAGTTCGT GCCGAGCCTG GGCGAAGGCG ACTTCGCCAT CCAGGCGCTG
CGCATTCCGG GCACCAGCCT CACACAGTCG GTCGAGATGC AAAAGCAGAT CGAACGCACG
CTGAAGGCGA AGTTTCCGGA GATCGAGCGC GTGTTCGCGC GCACCGGCAC GGCCGAGATC
GCGTCGGACC CGATGCCGCC GAACATTTCC GACGGCTACA TCATGCTGAA GCCCGAAGAC
CAGTGGCCCG TATTCCAAGG TACATCGCGC CGCACGCGCG ACGAGCTGCT GGCCGCCGTG
CAGCAAGAAG TCGAGAAGCT GCCGGGCAAC AGCTACGAGT TCTCGCAGCC GATCCAGCTG
CGCTTCAACG AACTGATCTC GGGCGTGCGC AGCGACGTGG CCGTGAAGAT CTTCGGCGAC
GACATGGAGG TGCTGAACAA GACCGCGGCC GAGGTGTCGG AAACCTTGGG CAAGATTCCC
GGCGCGGCCG AGGTGAAGGT CGAGCAGACC ACGGGCCTTC CGATGCTCAC GGTGAACATC
GACCGCGCCA AGACCGCGCG CTACGGCCTC AACGTGGGCG ACGTGCAGGA CGCGGTCTCC
ATTGCGGTGG GCGGCCGCGA GGCGGGCACG CTGTTCGACG GCGACCGGCG CTTCGGCATC
ATCGTGCGGC TGCCCGAGAA CCTGCGCACC GACCTGGAGG CGATCAAGCG CCTGCCGCTG
GCGCTGCCCG TGGGCGCGGG CGCGCAGGCC CCGCAGCGCG CCAGCTTCAT CCCGCTTGGC
GAAGTCGCCA CGCTGGAGCT TGCGCCGGGC CCGAATCAGG TGAGCCGCGA GGACGGCAAG
CGGCGCATCG TGGTGAGCGC CAATGTGCGC GGGCGCGACC TCGGCTCCTT CGTGGCCGAG
GCCGAGGAAG CGATGCGCAA GGTGCGCATT CCGCCGGGCT ACTGGACGGC CTGGGGCGGC
CAGTACGAGA ACCTGGCCTC GGCCGCCGAG CGGCTGCAGG TGGTGGTGCC GGTGTCGCTG
CTGCTGGTGT TCACGCTGCT GTTCGCGATG TTCGGCAACC TGAAGGACGG GTTGCTGGTG
TTCACCGGCA TTCCGTTTGC GCTCACGGGC GGCATCGTCG CGCTGTGGCT GCGCGGCATT
CCGCTGTCGA TCTCGGCGGC GGTGGGTTTC ATTGCGCTGT CGGGCGTGGC GGTGCTCAAC
GGGCTGGTGA TGATCTCGTT CATCCGCAAG CTGCGCGAAG GCGGGCTGCC GCTCGACGCG
GCAATCCGCG AAGGCGCGCT CACGCGGCTG CGGCCGGTGC TGATGACCGC GCTGGTCGCA
TCGCTGGGCT TCGTGCCGAT GGCCATCGCC ACGGGCACCG GCGCCGAGGT GCAGCGGCCG
CTGGCCACGG TGGTGATCGG CGGCATCCTG TCATCGACCG TGCTGACGCT GCTGGTGCTG
CCGCTGCTCT ACCGCATCGC GCACCGGCGC GATGCGGATG AGGAAGAGGC CGGCCCGCTC
AGCGCCTGA
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| Protein sequence | MFERVIRFSI EQRWLVLLAV LGMATLGVFS YQKLPIDAVP DITNVQVQIN TAAPGYSPLE
AEQRVTYPIE TVMAGLPGLQ QTRSLSRYGL SQVTVIFEDG TDIYFARQLV NERIQSARGS
MPSGISPVIG PISTGLGEIY LWTVEAEEGA KKADGKPYTS TDLREIQDWI IKPQLRNVKG
VTEINSIGGH AKEFQIAPDP AKLLAHGLSM ADLVSALERN NANVGAGYIE KRGEQYLIRA
PGQVKSVEDI GNVILASSSA SAAGMPLRVR DVAEVGIGQE LRTGAATDNG REVVLGTVFM
LIGENSRTVS QEVDKKMQQI NRTLPAGVKA VTVYDRTVLV DKAIATVKKN LFEGAVLVIA
VLFLFLGNMR AALITALVIP LSMLFTFTGM VNQKVSANLM SLGALDFGII IDGAVVIVEN
CVRRLAHAQA RHGRALTRSE RFHEVFAASQ EARRPLLFGQ LIIMVVYLPI FALAGVEGKL
FHPMAFTVVI ALLGAMILSI TFIPAAVALF IGHKVSEKEN RLMQWARCGY EPLLARAMAA
RPLVITTAVV AVLLSGLLAT RLGTEFVPSL GEGDFAIQAL RIPGTSLTQS VEMQKQIERT
LKAKFPEIER VFARTGTAEI ASDPMPPNIS DGYIMLKPED QWPVFQGTSR RTRDELLAAV
QQEVEKLPGN SYEFSQPIQL RFNELISGVR SDVAVKIFGD DMEVLNKTAA EVSETLGKIP
GAAEVKVEQT TGLPMLTVNI DRAKTARYGL NVGDVQDAVS IAVGGREAGT LFDGDRRFGI
IVRLPENLRT DLEAIKRLPL ALPVGAGAQA PQRASFIPLG EVATLELAPG PNQVSREDGK
RRIVVSANVR GRDLGSFVAE AEEAMRKVRI PPGYWTAWGG QYENLASAAE RLQVVVPVSL
LLVFTLLFAM FGNLKDGLLV FTGIPFALTG GIVALWLRGI PLSISAAVGF IALSGVAVLN
GLVMISFIRK LREGGLPLDA AIREGALTRL RPVLMTALVA SLGFVPMAIA TGTGAEVQRP
LATVVIGGIL SSTVLTLLVL PLLYRIAHRR DADEEEAGPL SA
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