| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3554 |
|---|
| Symbol | |
|---|
| ID | 7972180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3748964 |
|---|
| End bp | 3749548 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794139 |
|---|
| Product | molybdenum cofactor synthesis domain protein |
|---|
| Protein accession | YP_002945437 |
|---|
| Protein GI | 239816527 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0521] Molybdopterin biosynthesis enzymes |
|---|
| TIGRFAM ID | [TIGR00177] molybdenum cofactor synthesis domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC CCGACCCCGT CCGCATCGGC ATCGTCTCCA TCAGCGACCG CGCCTCCAGC
GGCACCTACG AGGACAAGGG CCTGCCCTCG CTGAAGGAAT GGCTGGCCCG CGCGCTCAAG
AATCCGATCG ATTTCGAGGC CCGGCTGATT CCCGACGAAG CGGCCCTCAT CAGCGCCACG
CTGATCGAGC TGGTGAACGC CGGCTGCTCG CTGGTGCTGA CCACCGGCGG CACCGGCCCG
GCGTTGCGCG ACGTCACGCC CGAAGCCACG CTGGCCGTGG CCCACAAGGA AATGCCCGGC
TTCGGCGAGC AGATGCGCCA GATCAGCCTG CGCTTCGTGC CCACCGCGAT CCTGTCGCGC
CAGGTGGCGG TGATCCGCGA CCAAAGCCTG ATCATCAACC TGCCGGGACA GCCCAAGTCG
ATCGCGGAAA CGCTCGAAGG GCTCAAGGAC ACCGAAGGCG TGCAGGTGGT GCCCGGCATC
TTCGCGGCGG TGCCCTACTG CATCGACCTG ATCGGCGGCC CGTACCTCGA AACGGACGAC
ACGGTCTGCA AGGCCTTCCG GCCCAAGTCG GCCATCAGGC GCTGA
|
|---|
| Protein sequence | MTTPDPVRIG IVSISDRASS GTYEDKGLPS LKEWLARALK NPIDFEARLI PDEAALISAT
LIELVNAGCS LVLTTGGTGP ALRDVTPEAT LAVAHKEMPG FGEQMRQISL RFVPTAILSR
QVAVIRDQSL IINLPGQPKS IAETLEGLKD TEGVQVVPGI FAAVPYCIDL IGGPYLETDD
TVCKAFRPKS AIRR
|
|---|
| |