| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3528 |
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| Symbol | |
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| ID | 7972154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3721040 |
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| End bp | 3723502 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794113 |
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| Product | nitrite reductase (NAD(P)H), large subunit |
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| Protein accession | YP_002945411 |
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| Protein GI | 239816501 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGA AACTCAAGCT CGTGATGGTC GGCAACGGCA TGGCCGGCGT GCGCACGCTC
GAAGAGCTGC TGAAGCTCGC CCCCGACCTG TACGACATCA CCGTCTTCGG CGCCGAGCCG
CACCCCAACT ACAACCGCAT CCTGCTGTCG CCCGTGCTCG CCGGCGAGCA GACCGTGGAC
GAGATCGTCC TCAACAGCTG GGAGTGGTAC GCCGAGAACA AGATCACCCT GCACGCCGGC
AAGAAGGTGG CCGAGGTCGA CCGCGTCAAG CGCATCGTGC GCGCCGAGGA TGGCACCGAG
GCCCCCTACG ACCGCCTCCT CATGTGCACC GGCTCCAACC CCTTCATGCT CCCGGTGCCC
GGCAAGGACC TGAAAGGCGT CATCGCCTAC CGCGACATCG CCGACACCGA CTACATGATC
GAGACCGCGC GCACCCACAA GAGCGCCGTC GTCATCGGCG GCGGCCTGCT CGGGCTGGAA
GCGGCCAACG GCCTGATGCT GCGCGGCATG GACGTCACCG TGGTGCACGT CATGCCCTGG
CTGATGGAGC GCCAGCTGGA CGACGTGGCG GGCAAGCTGC TGCAGAAGTC GCTGGAGGAC
CGGGGCCTGA AGTTCCTGAT CGGCGCCCAG ACCCAGGAAC TGGTGGGCAA TGACCAGGGC
CGCGTGGCCG CCATCCGCTT CAAGGACGGC ACCGAGGTTC CCGCCGACCT GGTCGTCATG
GCTGTGGGCA TCCGCCCCAA CACCGAACTG GCCGAGCGGA TGCGCCTGCA CTGCCACCGC
GGCATCGTCG TCACCGACAC CATGCAGACC GTGACCGATG CGCGCATCTA CTCGGTGGGC
GAATGCGCGG CCCACCGCGG CATCGCCTAC GGCCTGGTCG CCCCGCTCTT CGAGCAGGCC
AAGGTCGCGG CCAACCACCT GGCCCAGTTC GGCATCGGGC GCTACCTGGG GTCCCTCACC
TCCACCAAGC TCAAGGTCAC CGGCATCGAC CTGTTCTCGG CCGGCGAGTT CATGGGCGGC
GAAGGCACGG AAGAGATCGT CATGAGCGAC CCCTTCGGCG GGGTCTACAA GAAGCTGGTC
ATCAAGGACG ACAAGCTGGT GGGCGCGTGC CTGTACGGCG ACACGGTGGA CGGCAGCTGG
TACTTCAAGC TCCTGCGCGA CGGGCGCAGC GTGCACGACA TCCGCGACAA GCTGATGTTC
GGCGAATCCA ACATCGGCGA CACCGGCCAC GAGGGCCACA GCAAGGCCGC CGGCATGCCC
GACGACGCCG AGGTGTGCGG CTGCAACGGC GTGACCAAGG GCACCATCTG CAAGGCCATC
AAGGACAAGG GCCTGTTCAC CCTGGACGAG GTCAAGAAGC ACACCAAGGC CAGCGCCAGC
TGCGGCTCGT GCACCGGCCT CGTGGAGCAG ATCCTGATGT TCACCGCCGG CGGCGACTAC
TCGGCCACGC CCAAGAAGAA GGCCGTGTGC GGCTGCACCG ACGCGAACCA CCAGGACGTG
CGCGACGCCA TCCGCCGCGA ACACTACCTG ACGCACGACG AGGTGTATCG CAACCTGGGC
TGGCGCACGC CCAACGGCTG TGCCACCTGC CGCCCGGCCA TCAACTACTA CCTGATCAGC
ACCTGGCCCA AGGAGGCCAA GGACGATCCG CAGAGCCGCT TCATCAACGA GCGCAGCCAC
GCCAACATCC AGAAGGACGG CACCTATTCC GTCATCCCGC GGATGTGGGG CGGCCACACC
ACGCCCGACG AGCTGCGCCG CATCGCGGAT GCGGCCGACA AGTACCAGAT CCCGACCGTC
AAGGTCACGG GCGGCCAGCG CATCGACCTC TTGGGGGTGA AGAAGGAGGA CCTGGAGGGT
GTGTGGAAGG ACATCGGCAT GCCCTCGGGC TTTGCCTATG CCAAGAGCCT GCGCACGGTG
AAGACCTGCG TGGGCAGCGA GTGGTGCCGC TTCGGCACGC AAGATTCCAC CCAGATGGGC
AAGGATCTGG AGCGGGCGCT GTGGGCGATG TATTCGCCGC ACAAGGTCAA GCTCGCGGTC
TCGGGCTGTC CGCGCAACTG CGCCGAGGCC GGGATCAAGG ACGTGGGGGT GATCGGGGTG
GATTCGGGCT GGGAGCTGTA CGTGGGGGGC AACGGCGGCA TCAAGACCGA GGTGGCGCAG
TTCCTGGTGA AGGTGAAGAC GGCCGCCGAG GTGATGGAGT ATTCGGGCGC CTTCCTGCAG
CTGTACCGCG AGGAAGGCTG GTACCTGGAG CGCACGGTGC ACTACATCGG GCGGGTGGGG
CTGGACCATG TGAAGAAGAA GATCCTGGAG GACACCGAAG GCCGCAAGGC GCTGTGGGAG
CGGCTGCAGT TCGCGCTGGA TGGGGAGCCC GATCCGTGGT TCGAGTCGAG CCAGGCGTCG
GTGGACGTGC GGCAGTTCAC GCCGGTGGCG GTGGTGGATG ACAAGGCGAG CCAGGCGGCC
TGA
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| Protein sequence | MMKKLKLVMV GNGMAGVRTL EELLKLAPDL YDITVFGAEP HPNYNRILLS PVLAGEQTVD
EIVLNSWEWY AENKITLHAG KKVAEVDRVK RIVRAEDGTE APYDRLLMCT GSNPFMLPVP
GKDLKGVIAY RDIADTDYMI ETARTHKSAV VIGGGLLGLE AANGLMLRGM DVTVVHVMPW
LMERQLDDVA GKLLQKSLED RGLKFLIGAQ TQELVGNDQG RVAAIRFKDG TEVPADLVVM
AVGIRPNTEL AERMRLHCHR GIVVTDTMQT VTDARIYSVG ECAAHRGIAY GLVAPLFEQA
KVAANHLAQF GIGRYLGSLT STKLKVTGID LFSAGEFMGG EGTEEIVMSD PFGGVYKKLV
IKDDKLVGAC LYGDTVDGSW YFKLLRDGRS VHDIRDKLMF GESNIGDTGH EGHSKAAGMP
DDAEVCGCNG VTKGTICKAI KDKGLFTLDE VKKHTKASAS CGSCTGLVEQ ILMFTAGGDY
SATPKKKAVC GCTDANHQDV RDAIRREHYL THDEVYRNLG WRTPNGCATC RPAINYYLIS
TWPKEAKDDP QSRFINERSH ANIQKDGTYS VIPRMWGGHT TPDELRRIAD AADKYQIPTV
KVTGGQRIDL LGVKKEDLEG VWKDIGMPSG FAYAKSLRTV KTCVGSEWCR FGTQDSTQMG
KDLERALWAM YSPHKVKLAV SGCPRNCAEA GIKDVGVIGV DSGWELYVGG NGGIKTEVAQ
FLVKVKTAAE VMEYSGAFLQ LYREEGWYLE RTVHYIGRVG LDHVKKKILE DTEGRKALWE
RLQFALDGEP DPWFESSQAS VDVRQFTPVA VVDDKASQAA
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