| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3524 |
|---|
| Symbol | |
|---|
| ID | 7972150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3715590 |
|---|
| End bp | 3716399 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644794109 |
|---|
| Product | nitrate ABC transporter, ATPase subunits C and D |
|---|
| Protein accession | YP_002945407 |
|---|
| Protein GI | 239816497 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.569935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATG ATTCCAAGTA CATCGAGATC CACAACGTCG AGCAGCGCTT CAAGACGGCC
AAGGGCAGCT TCCTTGCGCT GCAGGGCGTC AACCTGAACG TGGCCAAGGG CGAGTTCGTC
ACGCTGATCG GCCACTCGGG CTGCGGCAAG TCGACGCTGC TGAACCTCAT CGCGGGCCTG
ACCACGCCGA CGCAAGGCGT GCTGCTGTGC GCGAACAGGG AAATCAAGGG CCCCGGCCCC
GAGCGCGCGG TGGTCTTTCA GAACCACTCG CTGCTGCCCT GGCTCACCTG CTTCGAGAAC
GTGTACCTGG CCGTCGAGCG CGTCTTTGCG GCCACCGAAG GCAAGGCGCA GCTGCGCGCG
CGCACCGATG CGGCGCTTGC AATGGTCGGC CTCTCGGCGG CTGCGCAGAA GCGCCCGGGT
GAAATCTCCG GCGGCATGAA GCAGCGCGTG GGCATTGCGC GCGCGCTGTC GATGGAACCC
AAGGTGCTGC TGATGGACGA GCCCTTCGGC GCCCTCGACG CACTCACGCG CGCCAAGCTG
CAGGACGAAC TGCTCGCGAT CGTGCAGAAG ACGCAGAGCA CCGTCGTGAT GGTCACGCAC
GACGTCGACG AGGCGGTGCT GCTCTCCGAC CGCATCGTGA TGCTCACCAA CGGCCCGGCC
GCCACCATCG GCGAGGTGCT GAAGGTCGAC ATCGCGCGTC CGCGCAACCG CGTCGAGCTG
GCCGAAGACC CGGCCTATGT TCATGCCCGC AAGGCCGTGA TCGATTTCCT CTACACGCGC
CAGGCGCACG TGGAGAAAGT CGCAGCCTGA
|
|---|
| Protein sequence | MNDDSKYIEI HNVEQRFKTA KGSFLALQGV NLNVAKGEFV TLIGHSGCGK STLLNLIAGL
TTPTQGVLLC ANREIKGPGP ERAVVFQNHS LLPWLTCFEN VYLAVERVFA ATEGKAQLRA
RTDAALAMVG LSAAAQKRPG EISGGMKQRV GIARALSMEP KVLLMDEPFG ALDALTRAKL
QDELLAIVQK TQSTVVMVTH DVDEAVLLSD RIVMLTNGPA ATIGEVLKVD IARPRNRVEL
AEDPAYVHAR KAVIDFLYTR QAHVEKVAA
|
|---|
| |