| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3520 |
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| Symbol | |
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| ID | 7972146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3710643 |
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| End bp | 3711701 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794105 |
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| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
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| Protein accession | YP_002945403 |
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| Protein GI | 239816493 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
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| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCTCC TGGGAATCGA ATCATCCTGC GACGAAACCG GCGTGGCGCT GGTGGAAACG
CATGGCAGCG CGCTGCCGCA GCTGCGCTCG CATGCGCTGC ACAGCCAGAT CGCCATGCAC
CAGGCCTATG GCGGCGTGGT GCCCGAGCTG GCCAGCCGCG ACCACATCCG CCGCGTGCTG
CCGCTGACCG AAGCCGTGAT GGCCGAGGCG GGCCGCTCGC TGGCCGAGAT CGACGTGGTC
GCCTACACGC GCGGGCCCGG CCTGGCCGGG GCCTTGCTGG TGGGCGCGGG CGTGGCCTGC
GCGCTGGGCG CGGCGCTCGG CAAGCCGGTG CTCGGGGTGC ATCACCTCGA AGGGCATTTG
CTGTCGCCGT TCCTGAGTGC CGATCCGCCG GAATTTCCCT TTGTGGCGCT GCTCGTGTCG
GGCGGCCATA CCCAGCTGAT GCGGGTCGAC GGCGTGGGCC GCTACGAGCT CCTGGGCGAA
ACCATCGACG ATGCGGCCGG CGAGGCCTTC GACAAGAGCG CCAAGCTCAT GGGCCTGCCC
TATCCGGGCG GCCCCTGGCT GGCCAAGCTG GCGGAGGCGG GCAACCCTGC GGCGTTCAAG
CTGCCGCGGC CGCTGCTGCA CAGCGGCGAC CTCGATTTTT CATTCGCCGG CCTGAAGACG
GCCGTGCTGA CGCAGGCCAA GAAGCTCGGC GCCGAGCTCG AGGCGAACAA GGCCGACCTG
GCCGCGTCCA CGCAGGCGGC CATCGTCGAG GTGCTGCTGA AGAAATCGCT GGCTGCGCTC
GGGCAGACGG GCCTCAAGCG GCTGGTCGTG GCCGGCGGCG TGGGCGCGAA CCGGAGCCTG
CGGGAACAGT TGAACGCCGC CTGCGCCAAG CGCGGCGTGC GCGTGCACTA TCCGGAACTG
CACCTGTGCA CCGACAACGG CGCGATGATT GCCATGGCGG CCGCCATGCG GCTGCAGTCG
GGTTTGGCAG AGGCGAGCGA GCGCTATGCC TTCGACGTCA AGCCGCGATG GCCCATGGCT
TCGCTGATGG CGTCATCCGC GGCGCCGGTG GCCGCGTAG
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| Protein sequence | MLLLGIESSC DETGVALVET HGSALPQLRS HALHSQIAMH QAYGGVVPEL ASRDHIRRVL
PLTEAVMAEA GRSLAEIDVV AYTRGPGLAG ALLVGAGVAC ALGAALGKPV LGVHHLEGHL
LSPFLSADPP EFPFVALLVS GGHTQLMRVD GVGRYELLGE TIDDAAGEAF DKSAKLMGLP
YPGGPWLAKL AEAGNPAAFK LPRPLLHSGD LDFSFAGLKT AVLTQAKKLG AELEANKADL
AASTQAAIVE VLLKKSLAAL GQTGLKRLVV AGGVGANRSL REQLNAACAK RGVRVHYPEL
HLCTDNGAMI AMAAAMRLQS GLAEASERYA FDVKPRWPMA SLMASSAAPV AA
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