| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3517 |
|---|
| Symbol | |
|---|
| ID | 7972143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3707983 |
|---|
| End bp | 3709263 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794102 |
|---|
| Product | putative transporter signal peptide protein |
|---|
| Protein accession | YP_002945400 |
|---|
| Protein GI | 239816490 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTC CCTTTATTTG GCGTCGCAAG GCCTTGAAAT TTGCGGCGCT GGCGCTATGC
GCGGCGCCCT TCGCAGCGCA GGCGCAGGCA GCGCCCGCGC CGATCCGCCT CGCGCTGATC
GAAAGCATGA GCGGGCCGTT CGCCAACACC GGCGAGGCCG TGTTCCGCAA CCTGCTGTGG
GCCGTGGAGC GCGTGAATGC GCGCGGCGGC ATCAAGCTGC CCGGCGGCGC ACGGCCGCTG
CAGCTCGACC GCTACGACAG CAAGGGGCAG AACGAAGAAG CGCTGTCGGC GCTGCGCGCG
GCCATCGACG ACGGCGCGCG CATCGTGCTG CAGGGCAATT CGTCGGCCAC CGCCGCGGCA
CTGGTCGATG CCATCGAGAA GAACAACGAG CGCGACCCCG CGCGGCGCGT GATCTTCCTC
AACTACGCGG CGGTCGATCC GGTGCTGACC AACGAGCGCT GCAGCTTCTG GCACTTCCGT
TTCGACGCGC ACGCCGACAT GCGCGTGGCT GCACTGATGC AAGTGGTGAA GGACGATGCG
GCCATCAAGC GCGCCTACCT GATCGGGCAG GACTACAGCT TCGGCCAGGC AGTGCTGCGC
GAATCGAAGC GCCAGCTCGG CCTGCAGCGG CCCGACATCG AGATCGTCGG GGAAGAGCTC
CATCCGATGG GCAAGGTGAA GGACTTCGCG CCCTACGCCA GCAAGATCAT CGCGAGCGGC
GCCCAGGCCG TGTTCACCGG CAACTGGGGC AACGACCTCA CGCTGCTCGT GAAGGCCGCG
CGCGAGGCCG GCTTCAACGG CAGCTTCTAT ACCTTCTACG GCAACGCACT CGGCGCGCCG
GCGGCCATCG GAGACGCCGG CATCGGCCGC GTGATCGCGG TGGCCGACTG GCTGCCCAAC
GTGCAGAGCG CGCAGTCCGA GGCCTTCTAC CGCGCCTTCC GCACGCGCTT TCCCAAGCCG
GCCGACGACT ATGTGCACAT GCGCATGCAA TTGCTCATCG AGTCGCTCGC GCAAGCGATC
GCACGCGCGG GCAGCGTCGA CGCGGTGGCC GTGGCGCGCG CGCTCGAGCA GGCCGACGTG
AGCCTCTACG GACAGCGCGG CCGCATGCGC GCGGCGGACC ATCAGTTCCA GCAGCAGCTG
GTGGTCGGCG TGATGGACAA GCAGGGCAGC CCGGGCGTGC AGTTCGATGT CGAGGGGTCG
GGCTACGGCT TTCGCGTGGT CAAGACCATC GCCCCCGAAC GCGCCGAGCT GCCGACGACC
TGCAAGATGA AACGACTCTA G
|
|---|
| Protein sequence | MNPPFIWRRK ALKFAALALC AAPFAAQAQA APAPIRLALI ESMSGPFANT GEAVFRNLLW
AVERVNARGG IKLPGGARPL QLDRYDSKGQ NEEALSALRA AIDDGARIVL QGNSSATAAA
LVDAIEKNNE RDPARRVIFL NYAAVDPVLT NERCSFWHFR FDAHADMRVA ALMQVVKDDA
AIKRAYLIGQ DYSFGQAVLR ESKRQLGLQR PDIEIVGEEL HPMGKVKDFA PYASKIIASG
AQAVFTGNWG NDLTLLVKAA REAGFNGSFY TFYGNALGAP AAIGDAGIGR VIAVADWLPN
VQSAQSEAFY RAFRTRFPKP ADDYVHMRMQ LLIESLAQAI ARAGSVDAVA VARALEQADV
SLYGQRGRMR AADHQFQQQL VVGVMDKQGS PGVQFDVEGS GYGFRVVKTI APERAELPTT
CKMKRL
|
|---|
| |