| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3514 |
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| Symbol | |
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| ID | 7972140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3703781 |
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| End bp | 3706099 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794099 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_002945397 |
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| Protein GI | 239816487 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCT TCAACAAAGT CACCAAGTCC TTCCAATGGG GCGACAAGAC CGTCGTCATG
GAAACCGGTG AAATCGCCCG CCAGGCCAGC GGCGCCGTGG TGGTCGACAT CGACGGCACC
GTGATCCTCG CGACCGTGGT CGCCTCCAAG ACCGCCAAGC CGGGCCAGGA CTTCTTCCCG
CTGACCGTCG ACTACATCGA GAAGACCTAC GCCGCGGGCA AGATCCCCGG CAGCTTCTTC
AAGCGCGAAG CCAAGCCCAG CGAACACGAA ACCCTGACCA GCCGCCTGAT CGACCGCCCG
ATCCGCCCGC TGTTCCCCGA GGGCTTCCTG AACGAAGTGC ATGTGGTCAT CCACACGCTG
TCGCTCAACC CCGAAGTCGA CGCCGACATC GCCGCCATGA TCGGCGTGAG CGCCGCGCTG
TCGATCTCCG GCATTCCGTT CAGCGGCCCG ATCGGTGCTG CCCGCGTGGG CTACATCAAC
GGCCAGTACG TGCTGAATCC GGGCCAGACC GCCCGCAAGG ATTCGCAGAT GGACCTCGTC
GTGGCCGGCA CCGAAGCCGC CGTGCTGATG GTCGAGTCCG AAGCACAGCA ACTCAGCGAA
GAAATCATGC TGGGCGGCGT GGTGTTCGGC CATGAGCAGG CCAACATCGC GATCAACGCG
ATCCATGAAC TCGTGCGCGA CGCCGGCAAG CCGGTGTGGG ACTGGCAAGC GCCGGCCGAA
GACGAAGCCT TCGTCGCCAA GGTCAAGAGC CTGGCCGAGG AAAAGCTGCG CGCCGTCTAC
CAGATCCGCA GCAAGCAAGC CCGCACGCAA GCCCTGCGCG AAGCCAATGC CAGCGTGATG
AACACGCTGA AGGAAAGCGG CGAGCCCTTC GACGCCGGCA AGGTCAACGA CCTGCTGTTC
GCTATCGAAT CGAAGATCGT CCGCAGCCAG ATCCTGTCGG GCGAACCGCG CATCGATGGC
CGCGACACGC GCACCGTGCG TCCCATCGAG ATCCGCAATT CCGTGCTGCC GCGCACCCAC
GGCTCGGCGC TGTTCACGCG CGGCGAGACG CAGGGCCTGG TCGTCACCAC GCTCGGCACC
GAACGCGACG CGCAGCGCAT CGACGCGCTG GCCGGCGAGT ACGAAGACCG CTTCCTGTTC
CACTACAACA TGCCTCCCTT TGCCACCGGC GAAGTGGGCC GCATGGGCTC GACCAAGCGC
CGCGAAATCG GCCACGGCCG CCTGGCCAAG CGCGCGCTCG TCGCCGTGCT GCCGACCAAG
GAAGAGTTCC CCTATACCAT CCGCGTGGTG TCTGAAATCA CCGAATCCAA CGGCTCCTCG
TCGATGGCCT CGGTGTGCGG CGGCTGCCTC TCGATGATGG ACGCCGGCGT GCCGATGAAG
GCCCACGTGG CCGGCATCGC CATGGGCCTC ATCAAGGAAG ACAACCGCTT TGCGGTGCTG
ACCGACATCC TGGGCGACGA AGATCACCTG GGCGACATGG ACTTCAAGGT GGCCGGCACG
ACCAACGGCA TCACCGCACT GCAGATGGAC ATCAAGATCC AGGGCATCAC CAAGGAAATC
ATGCAGGTCG CACTGGCCCA GGCCAAGGAA GCGCGCATGC ACATCCTCGG CAAGATGCAG
GAAGCCATGG GCGAGGCCAA GACCGAGGTG TCGCAGTTCG CACCGCGCCT GACCACGCTG
AAGATCAACC CCGAGAAGAT CCGCGACGTG ATCGGCAAGG GTGGCGCGGT CATCCGCGGC
CTGCAGGAAG AAACCGGCAC GACGATCAAC ATCGACGAAG ACGGCACCAT CACCATCGCC
TCGACCGACC CTGAAAAGGC CGAGTTCGCC AAGAAGCGCA TCGAGCAGAT CACGGCCGAA
GTCGAAATCG GCAAGGTCTA CGAAGGCCCG GTCACCAAGA TCCTGGACTT CGGCGCGCTC
ATCAACCTGC TGCCCGGCAA GGACGGCCTG CTGCACATCA GCCAGATCGC GCACGAGCGC
GTCGAGAAGG TGACCGACTA CCTGAGCGAA GGCCAGATCG TCAAGGTCAA GGTGCTCGAG
ACCGACGAAA AGGGCCGCGT CAAGCTGTCC ATGAAGGCCC TGACCGAGCG TCCGGCCGGT
ATGGAATACA GCGAGCGTCC GCCGCGCGAA GACCGTGGCG ACCGCGGTGA CCGTGGCGGC
GAGCGCCGCG AGCGTTCGGA CCGCGGCGAC CGTGGTGGCG ATCGCGGCGA ACGCGCTCCG
CGTTTCAACA GCGAGCAGCA ACAGCAGCCG CGCAGCAACG AGCAGCAGCC GGCACCCGTC
GGCGAGCAGC CGTACGCACC GCGCGATTCG CAAGAGTAA
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| Protein sequence | MSLFNKVTKS FQWGDKTVVM ETGEIARQAS GAVVVDIDGT VILATVVASK TAKPGQDFFP
LTVDYIEKTY AAGKIPGSFF KREAKPSEHE TLTSRLIDRP IRPLFPEGFL NEVHVVIHTL
SLNPEVDADI AAMIGVSAAL SISGIPFSGP IGAARVGYIN GQYVLNPGQT ARKDSQMDLV
VAGTEAAVLM VESEAQQLSE EIMLGGVVFG HEQANIAINA IHELVRDAGK PVWDWQAPAE
DEAFVAKVKS LAEEKLRAVY QIRSKQARTQ ALREANASVM NTLKESGEPF DAGKVNDLLF
AIESKIVRSQ ILSGEPRIDG RDTRTVRPIE IRNSVLPRTH GSALFTRGET QGLVVTTLGT
ERDAQRIDAL AGEYEDRFLF HYNMPPFATG EVGRMGSTKR REIGHGRLAK RALVAVLPTK
EEFPYTIRVV SEITESNGSS SMASVCGGCL SMMDAGVPMK AHVAGIAMGL IKEDNRFAVL
TDILGDEDHL GDMDFKVAGT TNGITALQMD IKIQGITKEI MQVALAQAKE ARMHILGKMQ
EAMGEAKTEV SQFAPRLTTL KINPEKIRDV IGKGGAVIRG LQEETGTTIN IDEDGTITIA
STDPEKAEFA KKRIEQITAE VEIGKVYEGP VTKILDFGAL INLLPGKDGL LHISQIAHER
VEKVTDYLSE GQIVKVKVLE TDEKGRVKLS MKALTERPAG MEYSERPPRE DRGDRGDRGG
ERRERSDRGD RGGDRGERAP RFNSEQQQQP RSNEQQPAPV GEQPYAPRDS QE
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