| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3512 |
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| Symbol | tpiA |
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| ID | 7972138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3701910 |
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| End bp | 3702695 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794097 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_002945395 |
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| Protein GI | 239816485 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTGACGG ACAACAACAC GATGACCACG AAAAAGAAGC TGATCGCGGG CAACTGGAAG
ATGAACGGCA GCCTGGCTGC CAACGAGGCG CTGGTGAAGG CCCTGCAGCA GGGCCTGGCC
GCGGCGCCGG CCAACTGCGG CATCGCGCTT TGCGCGCCGG CCCCGTATTT CGCGCAGCTG
CAATCGCTGC TGGCGGGCTC CTCGGCCATG GCGCTGGGGG CACAGGACAT CTCGGCGCAT
CCGCAGGGTG CGTTCACGGG CGAGCATTCG GCCACCATGC TGAAGGATTT CGGCGTGCGC
TATGCCATCG TCGGTCATTC GGAGCGCCGC CAATACCATG GCGAGACCGA TGAGGCGGTG
GCGGCCAAGG CGGCGGCTGC GCTCGCGAAC GGCATCACGC CGATCGTCTG CGTGGGCGAG
ACGCTGGCCG AACGCGAAGC AGGGCGCACC GAAGAAGTCG TCAAGCGCCA GCTGGCCGCG
GTGATCCACG TCAATGGCCA TTGCATCAGC GAGATCGTCG TGGCCTACGA GCCGGTCTGG
GCCATCGGCA CCGGCAAGAC GGCCACGCCG GAACAGGCGC AGGCGGTGCA TGCCGTGCTG
CGCGCACAGC TGCACCATGC CGCGAGCGAG CACGCCGCCG GCATCTGCAT TCTTTATGGC
GGCAGCATGA ACGCGGCCAA CGCCGCGCAG CTCCTGGCGC AGCCCGACAT CGACGGAGGC
CTGATCGGCG GCGCGTCGCT CAAGGCCCCC GACTTTTTGC AGATCATTTC CGCCGCTTCC
CGCTGA
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| Protein sequence | MVTDNNTMTT KKKLIAGNWK MNGSLAANEA LVKALQQGLA AAPANCGIAL CAPAPYFAQL
QSLLAGSSAM ALGAQDISAH PQGAFTGEHS ATMLKDFGVR YAIVGHSERR QYHGETDEAV
AAKAAAALAN GITPIVCVGE TLAEREAGRT EEVVKRQLAA VIHVNGHCIS EIVVAYEPVW
AIGTGKTATP EQAQAVHAVL RAQLHHAASE HAAGICILYG GSMNAANAAQ LLAQPDIDGG
LIGGASLKAP DFLQIISAAS R
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