Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3505 |
Symbol | |
ID | 7972130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3696553 |
End bp | 3697893 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794089 |
Product | NADH-quinone oxidoreductase, F subunit |
Protein accession | YP_002945388 |
Protein GI | 239816478 |
COG category | [C] Energy production and conversion |
COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCCCG AACAAGTGCT CCAGCAATTC CAGGCCACGG GCGTCCAGAC CTGTTTCCAT GACCGCCACA TCGAGCCGCA GATCTATGCC GGCCTGAACG GCACCAACTG GCGCCTGGCC GACTACGAGG CGCGCGGTGG CTACAAGGCG CTGCGCAAGA TCCTCACCGA GGGCCTCACG CCCGATCAGG TGATCGCCGA AGTCAAGGCC TCGGGCCTGC GCGGCCGCGG CGGCGCGGGC TTCCCCACGG GCCTGAAGTG GAGCTTCATG CCCCGCCAGT TCCCGGGCCA GAAGTACCTC GTCTGCAATT CCGACGAAGG CGAGCCGGGC ACCTGCAAGG ACCGCGACAT CCTGCAGTTC AACCCGCACA TCGTGATCGA AGGCATGGCC ATCGCCGCGT ATGCGATGGG CATCAGCGTG GGCTACAACT ACATCCACGG CGAGATCTTC CAGAGTTACG ACCGCTTCGA GGAAGCCCTC GAAGAGGCGC GCGCCGCCGG CTATCTCGGC GACAAGATCA TGGGCAGCAC GTACAACTTC CAGTTGCACG CAGCCCACGG CTTCGGTGCC TACATCTGCG GCGAGGAAAC CGCGCTGCTC GAATCGCTCG AAGGCAAGAA GGGCCAGCCA CGCTTCAAGC CGCCGTTCCC GGCGAGCTTC GGCCTCTACG GCAAGCCGAC CACCATCAAC AACACCGAGA CCTTCGCGGC GGTGCCCTGG ATCATCAACA ACGGCGGCCA GGCCTACCTC GAATGCGGCA AGCCGAACAA CGGCGGCACC AAGATCTACT CGGTGAGCGG CGACGTCGAG CTGCCGGGCA ACTACGAGGT GCCCATGGGC ACGCCGTTCT CCAAGCTGCT CGAACTGTGC GGCGGCGTGC GCAAGGGCCG CACGCTCAAG GCCGTGATTC CCGGCGGATC GTCGTCGCCG GTGCTGCCGG CTTCGATCAT GATGGAATGC ACGATGGACT ACGACTCCAT CGCCAAGGCC GGCTCCATGC TGGGCTCGGG CGCGGTGATC GTGATGGACG ACAGCCGCTC GATGGTCGAG TCGCTGCGGC GCCTCTCGTA CTTCTACATG CACGAATCCT GCGGCCAGTG CACGCCGTGC CGCGAAGGCA CGGGCTGGCT GTACCGCGTG GTGGACCGCA TCCACAACGG GCAGGGCAGG GCGTCGGACA TGGACCTCTT GAACTCCGTG GCAGACAACA TCCAGGGCCG TACCATCTGC GCGCTCGGCG ACGCGGCGGC CATGCCGGTG CGCGCCATGA TCAAGCACTT CCGTCACGAG TTCGAGGCCC TGATCCCGGG CTACGTCCCG AAGGCGTCGG TCCAAGCCTG A
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Protein sequence | MSPEQVLQQF QATGVQTCFH DRHIEPQIYA GLNGTNWRLA DYEARGGYKA LRKILTEGLT PDQVIAEVKA SGLRGRGGAG FPTGLKWSFM PRQFPGQKYL VCNSDEGEPG TCKDRDILQF NPHIVIEGMA IAAYAMGISV GYNYIHGEIF QSYDRFEEAL EEARAAGYLG DKIMGSTYNF QLHAAHGFGA YICGEETALL ESLEGKKGQP RFKPPFPASF GLYGKPTTIN NTETFAAVPW IINNGGQAYL ECGKPNNGGT KIYSVSGDVE LPGNYEVPMG TPFSKLLELC GGVRKGRTLK AVIPGGSSSP VLPASIMMEC TMDYDSIAKA GSMLGSGAVI VMDDSRSMVE SLRRLSYFYM HESCGQCTPC REGTGWLYRV VDRIHNGQGR ASDMDLLNSV ADNIQGRTIC ALGDAAAMPV RAMIKHFRHE FEALIPGYVP KASVQA
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