Gene Vapar_3505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3505 
Symbol 
ID7972130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3696553 
End bp3697893 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content66% 
IMG OID644794089 
ProductNADH-quinone oxidoreductase, F subunit 
Protein accessionYP_002945388 
Protein GI239816478 
COG category[C] Energy production and conversion 
COG ID[COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 
TIGRFAM ID[TIGR01959] NADH-quinone oxidoreductase, F subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCCCG AACAAGTGCT CCAGCAATTC CAGGCCACGG GCGTCCAGAC CTGTTTCCAT 
GACCGCCACA TCGAGCCGCA GATCTATGCC GGCCTGAACG GCACCAACTG GCGCCTGGCC
GACTACGAGG CGCGCGGTGG CTACAAGGCG CTGCGCAAGA TCCTCACCGA GGGCCTCACG
CCCGATCAGG TGATCGCCGA AGTCAAGGCC TCGGGCCTGC GCGGCCGCGG CGGCGCGGGC
TTCCCCACGG GCCTGAAGTG GAGCTTCATG CCCCGCCAGT TCCCGGGCCA GAAGTACCTC
GTCTGCAATT CCGACGAAGG CGAGCCGGGC ACCTGCAAGG ACCGCGACAT CCTGCAGTTC
AACCCGCACA TCGTGATCGA AGGCATGGCC ATCGCCGCGT ATGCGATGGG CATCAGCGTG
GGCTACAACT ACATCCACGG CGAGATCTTC CAGAGTTACG ACCGCTTCGA GGAAGCCCTC
GAAGAGGCGC GCGCCGCCGG CTATCTCGGC GACAAGATCA TGGGCAGCAC GTACAACTTC
CAGTTGCACG CAGCCCACGG CTTCGGTGCC TACATCTGCG GCGAGGAAAC CGCGCTGCTC
GAATCGCTCG AAGGCAAGAA GGGCCAGCCA CGCTTCAAGC CGCCGTTCCC GGCGAGCTTC
GGCCTCTACG GCAAGCCGAC CACCATCAAC AACACCGAGA CCTTCGCGGC GGTGCCCTGG
ATCATCAACA ACGGCGGCCA GGCCTACCTC GAATGCGGCA AGCCGAACAA CGGCGGCACC
AAGATCTACT CGGTGAGCGG CGACGTCGAG CTGCCGGGCA ACTACGAGGT GCCCATGGGC
ACGCCGTTCT CCAAGCTGCT CGAACTGTGC GGCGGCGTGC GCAAGGGCCG CACGCTCAAG
GCCGTGATTC CCGGCGGATC GTCGTCGCCG GTGCTGCCGG CTTCGATCAT GATGGAATGC
ACGATGGACT ACGACTCCAT CGCCAAGGCC GGCTCCATGC TGGGCTCGGG CGCGGTGATC
GTGATGGACG ACAGCCGCTC GATGGTCGAG TCGCTGCGGC GCCTCTCGTA CTTCTACATG
CACGAATCCT GCGGCCAGTG CACGCCGTGC CGCGAAGGCA CGGGCTGGCT GTACCGCGTG
GTGGACCGCA TCCACAACGG GCAGGGCAGG GCGTCGGACA TGGACCTCTT GAACTCCGTG
GCAGACAACA TCCAGGGCCG TACCATCTGC GCGCTCGGCG ACGCGGCGGC CATGCCGGTG
CGCGCCATGA TCAAGCACTT CCGTCACGAG TTCGAGGCCC TGATCCCGGG CTACGTCCCG
AAGGCGTCGG TCCAAGCCTG A
 
Protein sequence
MSPEQVLQQF QATGVQTCFH DRHIEPQIYA GLNGTNWRLA DYEARGGYKA LRKILTEGLT 
PDQVIAEVKA SGLRGRGGAG FPTGLKWSFM PRQFPGQKYL VCNSDEGEPG TCKDRDILQF
NPHIVIEGMA IAAYAMGISV GYNYIHGEIF QSYDRFEEAL EEARAAGYLG DKIMGSTYNF
QLHAAHGFGA YICGEETALL ESLEGKKGQP RFKPPFPASF GLYGKPTTIN NTETFAAVPW
IINNGGQAYL ECGKPNNGGT KIYSVSGDVE LPGNYEVPMG TPFSKLLELC GGVRKGRTLK
AVIPGGSSSP VLPASIMMEC TMDYDSIAKA GSMLGSGAVI VMDDSRSMVE SLRRLSYFYM
HESCGQCTPC REGTGWLYRV VDRIHNGQGR ASDMDLLNSV ADNIQGRTIC ALGDAAAMPV
RAMIKHFRHE FEALIPGYVP KASVQA