Gene Vapar_3502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3502 
Symbol 
ID7972127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3692735 
End bp3693280 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content63% 
IMG OID644794086 
ProductNADH dehydrogenase subunit I 
Protein accessionYP_002945385 
Protein GI239816475 
COG category[C] Energy production and conversion 
COG ID[COG1143] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 
TIGRFAM ID[TIGR01971] NADH-quinone oxidoreductase, chain I 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGCTG CGCATACCGC CGGCGCGCTC GCGCGCCCTT CCAAGCTCGC ATCCGCGCCT 
TTCTCGCTCA AGGACTTCCT GGGCAGCTTC ATGCTGTTCG AACTGTTCAA GGGCCTGGCC 
ATCACCGGCA AGTACGCCTT CGCCCGCAAG ATCACGGTGC AGTTCCCCGA AGAGAAGACG 
CCGCTGTCGC CGCGCTTTCG CGGCCTGCAC GCGCTGCGCC GCTATGAGAA CGGCGAAGAG 
CGCTGCATTG CCTGCAAGCT CTGCGAAGCC GTCTGCCCGG CGCTGGCCAT CACCATCGAA 
TCCGATGTGC GCGACGACGG CTCGCGCCGC ACCACGCGCT ACGACATCGA CCTGACCAAG 
TGCATCTTCT GCGGCTTCTG CGAAGAGAGC TGCCCGGTCG ATTCGATCGT GGAAACCCAC 
ATCTTCGAAT ACCACGGCGA AAAGCGCGGC GACCTGTACT TCACCAAGGA CATGCTGCTG 
GCCGTGGGCG ACCGCTACGA AAAAGAAATT GCAGCGAACA AGGCGGCCGA CGCCAAGTAC 
CGCTGA
 
Protein sequence
MTAAHTAGAL ARPSKLASAP FSLKDFLGSF MLFELFKGLA ITGKYAFARK ITVQFPEEKT 
PLSPRFRGLH ALRRYENGEE RCIACKLCEA VCPALAITIE SDVRDDGSRR TTRYDIDLTK 
CIFCGFCEES CPVDSIVETH IFEYHGEKRG DLYFTKDMLL AVGDRYEKEI AANKAADAKY 
R