| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3493 |
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| Symbol | |
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| ID | 7972118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3683381 |
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| End bp | 3685165 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794077 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945376 |
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| Protein GI | 239816466 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.68417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCTT CCCCTCTGTC TTCACCGGCC AAGGGCTCGC CCCGATCGCT GTCGGGCCTG
AGCCCTTTTC TTCGGCCCTA CCGCGTCCAG ATCGTGCTGG CGGGCATCTT CCTGGTGATG
GCCGCCGTCA CCACGCTGGT GTTTCCGCTG GCGCTGCGCA GCCTGATCGA CGGCGGTTTG
GTGAGCGCCG ACAAGGGCGC GCAGACCATG GCGCTGCGCG AGCACTTCGG CGCCCTGTTT
GCGGTGGCCG TGGCGCTCGG CCTCTTTTCG GCGGCGCGCT TCTATACGGT GAGCTGGCTC
GGCGAACGCG TCACGGCCGA CCTGCGCAAC GCCGTCTACG GCCACGTGCT GCGCCAGAGC
CCGGCGTTCT TCGAGACCAC CCAGACCGGC GAAGTGCTGT CGCGCCTGAC GGCCGACACC
ACGCTGGTCC AGACCGTGGT CGGCTCGTCA CTGAGCATGG GCCTGCGCAA TGCCGTCATG
GGGGTGGGTG CGCTGGCGGT GCTGATCTGG ACCAACCCCT ATGTGATGGT CCAGGTGCTG
GGCATCCTGG TGCTGGTGGT GCTGCCGAGC ATGTGGTTCG GACGGCGCGT GCGCAAGCTC
TCGCGCGCGA GCCAGGACCG CGTGGCCGAT TCGAGCGCCA TCGCGGCCGA GGTGCTCAAC
GCAATTCCGG TGGTGCAGAG CTACACGGCC GAATCGCGCG AGGCCGGCCG CTTCAATGCC
TCGACCGAGA ACGCCTTCAA GACCGCGGTG CGCCGCACCA AGGCGCGTTC CGTGCTGGTG
GCCTTCATCA TCATCGCCAC CTCGGCGGCG CTGCTCTGGG GCCTCTACCA GGGCACGCAG
GCGGTGCTGC GCGGCGACAT CACGGCCGGC CACCTGGGCC AGACGGTGGT GTACGTGGCC
ATTCTTGCGA GTGCGACCGC GGTACTCGGC GAAGTCTACG GCGACCTGCT GCGCGCGGCC
GGCGCAACCG AGCGCCTGAT GGAACTGCTG CATGCCCCGG CGGCCATCGT TTCACCACCC
GATCCGGTGG CTGCGCCCGT CCCCGTGGCC GGTAGCGCCG TCCAGCTCGA GGCGGTGACC
TTCCACTACC CCTCGCGGCC CGGCACGCCG GCGCTCAAGG ACTTCAGCCT CGACATCGCG
CCCGGCGAAA CGGTGGCCCT GGTGGGATCG AGCGGCGCCG GCAAGAGCAC GGTGTTCCAG
CTGCTGCTGC GCTACTACGA TCCGCAGTCC GGCCGCCTGC TGCTGGACGG CGCGCCGCTG
GCCTCGCTCG CGCTGCCCGA GTTGCGCACC CGCATTGGCC TGGTGCCGCA GGACGCCGTG
ATCTTCTCGG CCAGCGCCTT GGAGAACATC CGCTACGGCC GCCCCGACGC GACCACCGAC
GAAGTGCATG CCGCCGCGCG CGCGGCCTTC GCGCACGATT TCCTGCAGGC GCTGCCCGAG
GGCTACGACA CCTTCCTGGG CGAGCGCGGG GTGCGCCTGT CGGGCGGGCA GCGCCAGCGC
ATCGCGATTG CGCGCGCCAT TCTCAAGAAC CCGCCGCTGC TGCTGCTCGA CGAAGCCACC
AGCGCGCTCG ATGCGGAGAG CGAGCGCATG GTGCAGGCGG CGCTCGAATC GGCCATGGAA
GGCCGCACCA CGCTCGTGAT TGCGCACCGC CTGGCCACCG TGCAGAAGGC CGACCGCATC
ATCGTGCTGG ACCACGGCGG CATCGTCGAA CAGGGAACGC ACGCCACGCT GGTGGCGCAA
GGCGGGGTCT ATGCCCGCCT GGCCGCGCTG CAGTTCACGG CTTGA
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| Protein sequence | MASSPLSSPA KGSPRSLSGL SPFLRPYRVQ IVLAGIFLVM AAVTTLVFPL ALRSLIDGGL
VSADKGAQTM ALREHFGALF AVAVALGLFS AARFYTVSWL GERVTADLRN AVYGHVLRQS
PAFFETTQTG EVLSRLTADT TLVQTVVGSS LSMGLRNAVM GVGALAVLIW TNPYVMVQVL
GILVLVVLPS MWFGRRVRKL SRASQDRVAD SSAIAAEVLN AIPVVQSYTA ESREAGRFNA
STENAFKTAV RRTKARSVLV AFIIIATSAA LLWGLYQGTQ AVLRGDITAG HLGQTVVYVA
ILASATAVLG EVYGDLLRAA GATERLMELL HAPAAIVSPP DPVAAPVPVA GSAVQLEAVT
FHYPSRPGTP ALKDFSLDIA PGETVALVGS SGAGKSTVFQ LLLRYYDPQS GRLLLDGAPL
ASLALPELRT RIGLVPQDAV IFSASALENI RYGRPDATTD EVHAAARAAF AHDFLQALPE
GYDTFLGERG VRLSGGQRQR IAIARAILKN PPLLLLDEAT SALDAESERM VQAALESAME
GRTTLVIAHR LATVQKADRI IVLDHGGIVE QGTHATLVAQ GGVYARLAAL QFTA
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