| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3491 |
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| Symbol | |
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| ID | 7972116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3681294 |
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| End bp | 3682775 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794075 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002945374 |
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| Protein GI | 239816464 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAC CCCTCGCCGC GCGCGCCTTG CGCCGCACCC CCGTTGTTGC CGCCGTGCTG
CTGATGGCCG CGCTGGCCGG CTGCGCCGAC ATGGCCGGCA TCGGCTCCGA GGCCAGGCTG
CGCGACGCCG CGTCGCTCGG CCTTGCCGCG GACCGCAGCG CCGCCGCCGT GCCGGCCGTC
GAGCGCCAAT GGTGGCTCGC CTTCGGCGAT GCGCAGCTCA ACACGCTGAT CGACCAGGCC
GTGGCCGGCA ATCCGAACCT GCAGGTGGCG CGGGCGCGGC TCGCGCGCGC GCAGGCCTCG
GCGGACATCG CCGAGTCGGC ACTGAAGCCC AAGGTCAACG GCGAACTCGA CCTCAAGCGC
CAGAAGTTCA ACAGCAACTA CATCTATCCC GCGCCGCTCG GCGGCTCCAC GCAGAACATC
GGCCTGCTGC AGCTCGGCGC GAGCTGGGAG CTCGACTTCT TCGGCAAGAA CCGCACCGCG
CTCGAAGCCG CCATCGGCGC CGCCAACGCC GCAGCAGCCG ACGCCGATGC CGCGCGCGTG
CTGCTGGCCA GCAACGTGGC GCGCAGCTAC TTCCAGTGGG CGCGCCTGAA CGAGCAGCTC
GGCGTGGCGC GGCGCACGCT GGCCCAGCGC GAGGAAACGC TCAAGCTGGT GCATGACCGC
GTGTCCGCGG GCCTCGATAC CCGCCTCGAG CTGCGCCAGA GCGAAGGCGG CCTGCCCGAA
GCGCGCCAGC AGATCGAAGC CCTCGGCGAG CAGATCGCGC TGCAGCAGCA TGCGCTCGAT
GCGCTCGTGG GCCAGCCCGA CGTGTCCGCA TCGCTCAAGC CGCCAATGCT CGAAGCCGTC
AAGCCGATGG CGCTGCAGGC CAGCATTCCG GCCGACCTGC TGGGCCGCCG CGCCGACATC
GCTGCCGCGC GCTGGCGCGT CGAGGCCGCC ACCAGCGACG TGGCCAACGC CAAAACCCAG
TTCTATCCCA ACGTGAACCT CACGGCCTTC GCCGGCTTCC AGAGCCTGGG CTTCGGCAAG
CTGCTCAAGT CGGGCAGCGA GCAGTGGGGC GTGGGCCCCG CGATCCACCT GCCGATCTTC
GAAGGCGGCC AATTGCGCGC CAACCTGCGC GGCAAGGCGG CCGACCTGGA CGCCGCGATC
GAGAGCTACA ACGCCACCGT GCTCGACGCG GTGCATGACG CGGCCGACCA GGTGTCCAGC
GCCCAGTCGA TCACGCGCCA GCAGGCCGAG CAGCGCGCCG CGCAGACGGC CGCCGAAGGG
GCCTACGACA TCGCCGTGCA GCGCTATCGC GCGGGCCTGG GCAACTACCT CAACGTGCTG
ACCGCCGAAA CCGCCGTGCT CGCGCAGCGC CGGCTGGCGG TCGACCTGGC CGCACGCGCG
CTCGACACGC AGGTGGGCCT GGCGCGCGCG CTCGGCGGCG GCTGGCAGCC GCCGGCAACC
GCCACCGCCG CGGCCACCGC TTCACCTGCC GCATCGAACT GA
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| Protein sequence | MTEPLAARAL RRTPVVAAVL LMAALAGCAD MAGIGSEARL RDAASLGLAA DRSAAAVPAV
ERQWWLAFGD AQLNTLIDQA VAGNPNLQVA RARLARAQAS ADIAESALKP KVNGELDLKR
QKFNSNYIYP APLGGSTQNI GLLQLGASWE LDFFGKNRTA LEAAIGAANA AAADADAARV
LLASNVARSY FQWARLNEQL GVARRTLAQR EETLKLVHDR VSAGLDTRLE LRQSEGGLPE
ARQQIEALGE QIALQQHALD ALVGQPDVSA SLKPPMLEAV KPMALQASIP ADLLGRRADI
AAARWRVEAA TSDVANAKTQ FYPNVNLTAF AGFQSLGFGK LLKSGSEQWG VGPAIHLPIF
EGGQLRANLR GKAADLDAAI ESYNATVLDA VHDAADQVSS AQSITRQQAE QRAAQTAAEG
AYDIAVQRYR AGLGNYLNVL TAETAVLAQR RLAVDLAARA LDTQVGLARA LGGGWQPPAT
ATAAATASPA ASN
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