| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3490 |
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| Symbol | |
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| ID | 7972115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3679908 |
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| End bp | 3681254 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794074 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002945373 |
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| Protein GI | 239816463 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.592297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACA ACAACACTCC GACGCCCGCT GCAGCCAACG CTTCCGCAGC TCCCGAAGCA
CCCGCCGGCA ACGGCAAGCG CCGCCGCGCA CTGACCGCGC TGGCGGCCGT GGTGATCGTC
GCCGGCGGCG GCTGGGGCCT CTACGAATGG CTGGTGGCCA GCCACTACGA GGACACCGAC
AACGCCTACG TGCAGGGCAA CGTGATCCAG ATCACGCCGC AGATCGGCGG CACCGTCATG
GCCATCAATG CCGACGACAC CGACTTCGTG AAGGCCGGCC AGCCGCTGGT GCAGCTGGAC
CCCGCCGATG CGAAGGTGGC GCTCGAGCAG GCCGAGGCCG CGCTCGCGCA GGCCGTGCGC
CAGGTGCGCA CGCTCTATGC CAACAACGGT TCGCTGGCCG CGCAGATCAC GCTGCGCCAG
GCCGACATCG TCAAGGCGCA GAGCGACATC GCCAAGGCGC AGGACGACCT GCAGCGCCGC
CGCGCGCTGT CGGGCAACGG CGCGGTCTCC AAGGAAGAAC TCAACCACGC CGAGACGGCG
CTGGACAACG CCAAGAGCCA GCTCGCCGCC GCGCAGGCCG GCGTGGTGGC CGCGCGCGAA
GCGCTGGCCA GCAACCAGTC GCTGACCGAG GGCACCAGCG TGGCCCAGCA CCCGAGCGTG
CTGGCGGCCG CCGCCAAGGT GCGCGAGGCC TACCTGGCCA CGCAGCGCGT CGCGCTGCCG
GCGCCGGTCG ACGGCTACGT CGCCAAGCGC ACCGTGCAGC TCGGCCAGCG CGTGGCGGCC
GGCACGCCGA TGATGTCGAT CGTGCCGCTG AACCAGCTGT GGGTCGACGC CAACTTCAAG
GAAGTGCAGC TGCGCAACAT CCGCATCGAC CAGCCCGTGA AGCTCAGGGC CGACGTCTAC
GGCAAGAAGG TGGAATACAC CGGCAAGGTC GCGGGCCTGG GCGTGGGCAC CGGCAGCGCC
TTTGCGCTGC TGCCCGCGCA GAACGCCACC GGCAACTGGA TCAAGGTGGT GCAGCGCGTG
CCCGTGCGCA TCGCGCTCGA CCCCGAGCAG CTCAAGGCCA ACCCGTTGCG CATCGGCCTG
TCGATGGACG CCGAGATCGA CATCTCGCAA AAGAGCGGCA AGATGCTGGC CGACGCGCCG
CGCCCCACCG CCATCTCGCA GACGCAGGTC TACAGCAAGC TCGACCAGGG CGCCGACGCC
GAGGTCGACC GCATCGTGGC CGCCAACCTG GGCCGCGGCG CACCGGCCGC CTCTGCGGCG
CCGGCACCGG CTGCGGGCCG CTCCGCCGTG CCCGCGGCCG CCGCCGGCAC CGCGGCACAG
GCTGCTTCGC AATCCCATCC CGGCTGA
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| Protein sequence | MSDNNTPTPA AANASAAPEA PAGNGKRRRA LTALAAVVIV AGGGWGLYEW LVASHYEDTD
NAYVQGNVIQ ITPQIGGTVM AINADDTDFV KAGQPLVQLD PADAKVALEQ AEAALAQAVR
QVRTLYANNG SLAAQITLRQ ADIVKAQSDI AKAQDDLQRR RALSGNGAVS KEELNHAETA
LDNAKSQLAA AQAGVVAARE ALASNQSLTE GTSVAQHPSV LAAAAKVREA YLATQRVALP
APVDGYVAKR TVQLGQRVAA GTPMMSIVPL NQLWVDANFK EVQLRNIRID QPVKLRADVY
GKKVEYTGKV AGLGVGTGSA FALLPAQNAT GNWIKVVQRV PVRIALDPEQ LKANPLRIGL
SMDAEIDISQ KSGKMLADAP RPTAISQTQV YSKLDQGADA EVDRIVAANL GRGAPAASAA
PAPAAGRSAV PAAAAGTAAQ AASQSHPG
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