| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3489 |
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| Symbol | |
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| ID | 7972114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3678315 |
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| End bp | 3679877 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794073 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_002945372 |
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| Protein GI | 239816462 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0745161 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACTG CTGCTCCCGC CTACGTTGCG CATCCGCCGC TCGAGGGCGC CGCCCGCGTC
TGGGGCACGA TCGCGCTGTC GGCCGCGACC TTCATGAACG TGCTCGATTC GTCGATCGCG
AACGTGTCGC TGCCGGCCAT CTCGGGCGAC CTGGGCGTGA GCACCACGCA AGGCACCTGG
GTCATCACCA GCTTCGCGGT GGCCAACGCC ATCGCGGTGC CGCTCACGGG CTTCATGACG
CAGCGCTTCG GACAGGTGCG CCTGTTCATG GCCAGCGTGA TCCTGTTCAT GGTCAGCTCG
CTCCTGTGCG GTCTGGCGCC GAACATGACC ACGCTGATCC TGTTCCGCGC GCTGCAGGGC
TTTGTCGCGG GGCCGATGAT CCCGCTGTCG CAGACGCTCC TGCTGTCGAG CTATCCGCGC
GCCAAGGCGG GCCTCGCAAT GGCGATGTGG TCGATGACCA CGCTGGTCGC GCCGGTGATG
GGGCCGCTGC TGGGCGGCTG GATCACGGAC AACATCTCAT GGCCGTGGAT CTTCTACATC
AACATTCCCG TGGGCATCGT CGCGGCCGGC ATCACCTGGG CGCTCTACCG CAAGCGCGAG
AGCAACACGC ACAAGGTGCC GATCGACGCC ATCGGCCTCG CGCTGCTGGT GCTGTGGGTC
GGCTCGATGC AGCTCATGCT CGACAAGGGC AAGGAGCTCG ACTGGTTCCA CTCGCCCGAG
ATCGTCACGA TGGCCGTGAT CGCGGTGGTC GGCTTCGCCT TCTTCCTGAT CTGGGAGCTG
ACCGACAAGC ACCCGGTGGT CGACCTGTCG CTCTTCAAGC GCCGCAACTT CTGGTCGGGC
GCCGTGGCCA CCGCCGTGGC CTATGGCCTG TTCTTCGGCA ACGTGGTGCT GCTGCCGCTG
TGGCTGCAGC AATGGATGGG CTACACCGCC ACGCAGGCCG GCATGATCAT GGCGCCGGTG
GGGCTGCTGG CGATCTTCTT CTCGCCGGTG GTCGGGCTCA CCGTGGCCAA GATCGACCCA
AGGCGCTACG CCACCTTCTC GTTCCTGGTG TTTGCGCTGG TGCTGTGGAT GCGCTCGAAC
TTCAACACGC AGGCCGACTT CGTGACGATC ATCATCCCGA CGATCATCCA GGGCATCGCG
ATGGCGTTCT TCTTCATTCC GCTGGTGACC ATCACGCTCT CGGGCCTCAC GCCCGACCGC
ATACCGGCCG CATCGGGGCT GTCGAACTTC CTGCGCATCA CGGCGGGCGC CATGGGCACG
TCGATCACCA CCACGCTGTG GGAGAACCGC GCGGCGCTGC ACCACTCGCA GCTCGCGGAG
TCGGTGAACC CGGGCAACAA CGCAGCAGCC AGCGCGATGT CGGGACTGGC GAGCAGCGGC
CTGAGCACCG AGCAGGTGAT GGGCCAGATC AACCGCATCG TCGACCAGCA GGCCTTCATG
CTGGCCACCA ACGACATCTT CTATGCGTCG GCGATCCTGT TCCTGCTGCT GATTCCGCTG
GTGTGGCTGG CCAAGCCGCA GCGCGGCGGT GCCGGGGGCG ACGCCGCAGC CGGCGCGCAT
TGA
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| Protein sequence | MATAAPAYVA HPPLEGAARV WGTIALSAAT FMNVLDSSIA NVSLPAISGD LGVSTTQGTW
VITSFAVANA IAVPLTGFMT QRFGQVRLFM ASVILFMVSS LLCGLAPNMT TLILFRALQG
FVAGPMIPLS QTLLLSSYPR AKAGLAMAMW SMTTLVAPVM GPLLGGWITD NISWPWIFYI
NIPVGIVAAG ITWALYRKRE SNTHKVPIDA IGLALLVLWV GSMQLMLDKG KELDWFHSPE
IVTMAVIAVV GFAFFLIWEL TDKHPVVDLS LFKRRNFWSG AVATAVAYGL FFGNVVLLPL
WLQQWMGYTA TQAGMIMAPV GLLAIFFSPV VGLTVAKIDP RRYATFSFLV FALVLWMRSN
FNTQADFVTI IIPTIIQGIA MAFFFIPLVT ITLSGLTPDR IPAASGLSNF LRITAGAMGT
SITTTLWENR AALHHSQLAE SVNPGNNAAA SAMSGLASSG LSTEQVMGQI NRIVDQQAFM
LATNDIFYAS AILFLLLIPL VWLAKPQRGG AGGDAAAGAH
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