| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3488 |
|---|
| Symbol | |
|---|
| ID | 7972113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3677063 |
|---|
| End bp | 3678298 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794072 |
|---|
| Product | N-acylglucosamine 2-epimerase |
|---|
| Protein accession | YP_002945371 |
|---|
| Protein GI | 239816461 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2942] N-acyl-D-glucosamine 2-epimerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0932448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATGA CCCATCGGTT CGAACCCTTC AGTCCCATGC CGAACTTCCG CTCGCCCGAA
TTCCTGACCG GCCACATCGT GCACACGCTG GCCTTCTATG AGCCGGTCTG CCGCGACCCA
TCAGGTGGCT TCTTCCACTT CTTCAAGGAC GACGGCACGG TGTACGACCG GCGCACGCGC
CACCTCGTCA GCAGCACGCG CTTCGTCTTC AACCATGCGA TGGCGTACCG GCGCTTCGGC
GATCCGAAGC ACCTCGACGG CGCGCGCCAC GGCCTGACTT TCGTGCAGCG CGCGCATGCG
CAGCCGGGCG GCGGCTATGC GTGGCAGGTC GACTGGCACG AGGGCCGCGC CACCGTGCAG
GACGGCACGC AGCATTGCTA CGGCCTGGCC TTCGTGCTGC TCGCGCATGC GCATGCGCTC
ATGGCCGGCA TCGAAGAAGC GCGCTCAGGG CTCGAGGCCA CCTGGCAGCT GATGGAGCGG
CATTTCTGGG AGCCTCGGCA CGCGCTCTAT GCCGACGAAG CCAGCCCCGA CTGGCACGTG
GGCACGTACC GCGGCCAGAA CGCCAACATG CACGCCTGCG AAGCGATGCT TGCGGCCTTC
GAGGCCACGC AGGACGCGCG CTACCTCGAT CGCGCGCTCG CGCTGGCGGA GTCGGTCACG
GGCCGGCAGG CGGCGCTGGC CGGCGGACTG GTCTGGGAGC ACTACCGCGA AGACTGGTCG
GTCGACTGGG ACTACAACCG CGGCGACAAG AGCAACATCT TCCGGCCCTG GGGCTTCCAG
ACCGGGCACC TGACCGAGTG GGCCAAGCTG CTGCTGCAAC TGGAGCGCGC GCTGGTTGCC
GCGGGCCGCG AAGCGGAGTG GGCCGTGCCG CGCGCCAGGC ACTTCTTCGA CACCGCGATG
CTGCGCGGCT GGGACGCGGC GCATGGCGGC CTCGCCTACG GATTCGGCCC CGATGGCGCG
GTGTGCGACG GCGACAAGTA CTTCTGGGTG CAGGCCGAGA GTTTTGCCGC CGCCGCCCTG
CTGGCCGCGC GCACCGGCGA TGCCGGCTAC TGGAGCTGGT ACGACCGCAT CTGGGCCTGC
AGCTGGGCGC ATTTCGTCGA CCACCGCCAT GGCGCGTGGT ACCGCATTCT CACGCCCGAC
AACCGCAAGA TCAGCGACGA AAAAAGCCCC GCCGGCAAGA CCGACTACCA CACCATGGGC
GCGTGCTACG ACGTGCTGCG CGCACTCGGC GCCTGA
|
|---|
| Protein sequence | MTMTHRFEPF SPMPNFRSPE FLTGHIVHTL AFYEPVCRDP SGGFFHFFKD DGTVYDRRTR
HLVSSTRFVF NHAMAYRRFG DPKHLDGARH GLTFVQRAHA QPGGGYAWQV DWHEGRATVQ
DGTQHCYGLA FVLLAHAHAL MAGIEEARSG LEATWQLMER HFWEPRHALY ADEASPDWHV
GTYRGQNANM HACEAMLAAF EATQDARYLD RALALAESVT GRQAALAGGL VWEHYREDWS
VDWDYNRGDK SNIFRPWGFQ TGHLTEWAKL LLQLERALVA AGREAEWAVP RARHFFDTAM
LRGWDAAHGG LAYGFGPDGA VCDGDKYFWV QAESFAAAAL LAARTGDAGY WSWYDRIWAC
SWAHFVDHRH GAWYRILTPD NRKISDEKSP AGKTDYHTMG ACYDVLRALG A
|
|---|
| |