| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3485 |
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| Symbol | |
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| ID | 7972110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3674139 |
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| End bp | 3675335 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794069 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002945368 |
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| Protein GI | 239816458 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.381916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACCA AGCTCAAAAT CATTGCTCTC ATGCTCGGGG CCGCGGGTCT TGCGAGCCAT
GCCGTGCAGG CGCAGGAGAA GGTCGTCATC GGCTACATCA GCGACCTGTC GGGCCTGTAC
GCCGACCTGG AAGGCAAGGG CGGCGCCACG GCCATCCAGA TGGCCATCGA CGACATGGGC
GGCAAGGTGC TCGGCCAGCC GGTCGAGGTG CTGAGCGTCG ACCACCAGAA CAAGCCCGAC
ATCGCGGCCT CGAAGGCGCG CGAGTGGATC GACACGGCGG GCGCCACGAT GATCTTCGCG
GGCACCAATT CGGGCGTGGC GCTGGCCACT GCCAAGGTGG CGCAGGAAAA GAAGCGCGTG
TTCTTCACCA ACGGCGCGGC CACCTCGGCG CTCACCAACG CGCAGTGCAG CCCCTACACC
GTGCACTACG CCTACGACAC CGTCGCGCTC GCCAAGAGCA CCGGCGGCGC GGTGGTCGAC
ACCGGCGGCA AGAGCTGGTT CTTCCTGACG GCCGACTATG CCTTCGGCCA TGCGCTCGAG
GCCGACACCG CCAAGGTCGT CAAGGCCAAG GGCGGCTCGG TGGTGGGCAC GGTGCGGGCG
CCGCTCAATG CGTCGGACTT CTCCTCCTTC CTGCTGCAGG CGCAGAACTC CAAGGCCCAG
GTGCTGGGCC TGGCCAATGC CGGCGGCGAC TTCATCAACT CGATGAAGGC CTCGAAGGAA
TTCGGAATCG ACAAGTCGAT GAAGATCGCG GGCCTGCTGG TGTTCCTCAC CGACGTCAAG
AGCCTCGGCC TGCCGGCCAC GCAGGGCCTG TTGCACACCA CCAGCTGGTA TTGGGACGCC
GACGACGAGT CGCGCAAGTG GGCCGCGCGC TACGAAGCCA AGACCAAGAA CAAGCCGACC
GACATCCAGG CCGCCGACTA CTCGGCCACC ATGGCCTACC TCAAGGCCGT GGAAGCCGTG
AAGAGCACCG ATGCCGACAA GGTCATGGCC TACCTCAAGA AGACGCCGAT CAACGACTTC
TACGCCAAGG GCGTGATCCG CGCCGACGGC CGCATGGTGC ACGACATGCT GCTGGCCGAG
GTCAAGAAGC CTTCGGAATC CAAGGGCCCC TGGGACCTGC TGAAGATCGT CAAGAAGGTG
CCGGGCGACC AGGTCTACAC GACCAAGGAA GAAAGCACCT GCGCGCTGTG GAAGTAA
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| Protein sequence | MQTKLKIIAL MLGAAGLASH AVQAQEKVVI GYISDLSGLY ADLEGKGGAT AIQMAIDDMG
GKVLGQPVEV LSVDHQNKPD IAASKAREWI DTAGATMIFA GTNSGVALAT AKVAQEKKRV
FFTNGAATSA LTNAQCSPYT VHYAYDTVAL AKSTGGAVVD TGGKSWFFLT ADYAFGHALE
ADTAKVVKAK GGSVVGTVRA PLNASDFSSF LLQAQNSKAQ VLGLANAGGD FINSMKASKE
FGIDKSMKIA GLLVFLTDVK SLGLPATQGL LHTTSWYWDA DDESRKWAAR YEAKTKNKPT
DIQAADYSAT MAYLKAVEAV KSTDADKVMA YLKKTPINDF YAKGVIRADG RMVHDMLLAE
VKKPSESKGP WDLLKIVKKV PGDQVYTTKE ESTCALWK
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