| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3484 |
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| Symbol | |
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| ID | 7972109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3673180 |
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| End bp | 3674055 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794068 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002945367 |
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| Protein GI | 239816457 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.282429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTT CCATGCCTGC CCTGTTGAGC CAGCTCCTGC TGGGGCTGGT CAACGGGTCG
TTCTATGCGA TCCTGAGCCT GGGGCTGGCG GTGATCTTCG GGCTGCTCAA CGTCATCAAC
TTCGCGCATG GCGCGCTGTT CATGATGGGG GCGGTGCTGT CGTGGATGGC GATGAACTAC
TTCAACGTCA ACTACTGGGT CATGCTGGTG GTGGCGCCGG TCATCGTCGG CCTGTTCGGC
GTGCTGATCG AGCGGCTGCT GCTGCGCTGG ATCTACAAGC TCGACCACCT CTACGGCCTC
TTGCTCACGC TGGGCCTCAC GCTGCTGATC GAAGGCGGCT TCCGCTCGGT GTACGGCGTC
TCTGGCCTGG CCTACAGCAC GCCCGAGGCG CTGAGCGGCG GCACCAACCT GGGCTTCATG
TTCCTGCCCA ACTACCGCGC GTGGGTGGTG GTGGCGTCGC TGGTGGTGTG CTTTGCCACC
TGGTATGCAA TTGAAAAGAC GCGGCTCGGT GCCTACCTGC GCGCCGGCAC CGAGAACCCG
CGGCTGGTGG AAGCCTTCGG CGTCAACGTG CCGCTGATGG TGACGCTGAC CTACGGCTTC
GGCGTGGCGC TGGCGGCCTT CGCGGGCGTG CTCGCGGCGC CGGTGATCCA GATCTCGCCG
CTGATGGGGC AGAACCTCAT CATCATCGTG TTCGCGGTGG TCGTGATCGG CGGCATGGGC
TCGATCATGG GCGCCATCCT CACGGGCCTG GGGCTCGGCG TGGTCGAGGG GCTGACCAAG
GTGTTCTATC CGGAGGCTTC GGCCACGGTG GTGTTCGTGA TCATGGTCGT GGTGCTGCTG
ATCCGTCCGG CGGGCCTGTT CGGCAGCGAG AAGTGA
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| Protein sequence | MNISMPALLS QLLLGLVNGS FYAILSLGLA VIFGLLNVIN FAHGALFMMG AVLSWMAMNY
FNVNYWVMLV VAPVIVGLFG VLIERLLLRW IYKLDHLYGL LLTLGLTLLI EGGFRSVYGV
SGLAYSTPEA LSGGTNLGFM FLPNYRAWVV VASLVVCFAT WYAIEKTRLG AYLRAGTENP
RLVEAFGVNV PLMVTLTYGF GVALAAFAGV LAAPVIQISP LMGQNLIIIV FAVVVIGGMG
SIMGAILTGL GLGVVEGLTK VFYPEASATV VFVIMVVVLL IRPAGLFGSE K
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