| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3483 |
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| Symbol | |
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| ID | 7972594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3672188 |
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| End bp | 3673174 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794067 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002945366 |
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| Protein GI | 239816456 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.742895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA TATCGCTCGT CGTCTACGGG GTGCTGCTGC TGGCGCTCAT CGCGGCACCT
TTCATCGGCT TCTATCCGGT GTTCGTGATG AAGGTGCTGT GCTTTGCGCT CTTTGCCTGC
GCCTTCAACC TGCTGCTGGG CTACACCGGC ATGCTGTCCT TCGGCCATGC CGCGTTCCTC
GGCGGCTCGG CCTACCTCAC GGGCCATGCG CTCAAGGTCT GGCACCTCAC GCCCGAGCTC
GGGCTGATCG CGGGCACGCT GGCCGGCGCG CTGCTCGGGC TGGTGTTCGG CTGGCTGGCC
ATCCGCCGCC AGGGCATCTA TTTTTCGATG ATCACGCTGG CGCTCGCGCA GATGATGTAC
TTCGTCGCGC TGCAGGCACC GTTCACGGGC GGCGAGGACG GGCTGCAGAG CGTGCCGCGC
GGCAAGCTCT TCGGCCTCAT CGACCTGCGC GACGACCTCA CGATGTACTA CGTCGCGCTG
GTGATCGTGG TGGCGGCCTT CCTGCTCATC GCGCGCACCG TGCATTCACC GTTCGGCCAG
GTGCTCAAGG GCATCAAGGA GAACGAGCCG CGCGCCATCT CGCTCGGCTA CGACGTCAAC
CGCTTCAAGC TGCTGGCCTT CGTGATCTCG GCCGCGCTGT CGGGCCTGGC CGGCTCGCTC
AAGACACTGG TGCTCGGCTT CGCTTCGCTG AGCGACGTGC ACTGGACCGC CTCGGGCCAC
GTGATCCTCA TGACGCTGGT GGGCGGCCTG GGCACGCTGT CGGGCCCGCT GGTGGGCTCG
GCGGTCGTGG TGCTGCTGGA GAACAAGGTG GGCGACTTCG GCAGCTTCAT GGCGCACCTC
ACCGGCGTCG ACTGGTTCAA CACGCTCGGC GAGTCGGTCA CCATGGTCAC GGGCCTGATC
TTCGTGATCT GCGTGCTGGC GTTCCGCAGG GGCATCATGG GCGAGGTCAT CGCCTTCATC
GACCGGCGCC GCGGCAAGAA GGCCTGA
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| Protein sequence | MKKISLVVYG VLLLALIAAP FIGFYPVFVM KVLCFALFAC AFNLLLGYTG MLSFGHAAFL
GGSAYLTGHA LKVWHLTPEL GLIAGTLAGA LLGLVFGWLA IRRQGIYFSM ITLALAQMMY
FVALQAPFTG GEDGLQSVPR GKLFGLIDLR DDLTMYYVAL VIVVAAFLLI ARTVHSPFGQ
VLKGIKENEP RAISLGYDVN RFKLLAFVIS AALSGLAGSL KTLVLGFASL SDVHWTASGH
VILMTLVGGL GTLSGPLVGS AVVVLLENKV GDFGSFMAHL TGVDWFNTLG ESVTMVTGLI
FVICVLAFRR GIMGEVIAFI DRRRGKKA
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