| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3475 |
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| Symbol | |
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| ID | 7972586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3658915 |
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| End bp | 3660144 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644794059 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002945358 |
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| Protein GI | 239816448 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.242606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCACC CGGCGGCTCA CCAGGCCGCC GAACGTGCGG CGCGCGAGTC GTACGGCCGC
CTGCTGGCCA TCCTGTCCGC GCGCACGCAC GACATCGCCG CATCGGAAGA TGCGCTCGCC
GAGGCCTTCG CGCGCGCGCT GGAGCGCTGG CCGGCCGACG GCATTCCCGC ACAGCCCGAG
GCCTGGCTGC TGAGCGTGGC GCGGCACCGC AAGCTCGACG CCTGGCGCCA CAGCCGCGTG
CAGGACGACG CAACGCAGTC GCTGCTGCTC TTGGCCGGCG AGATGGACGA CGCCCCTGAG
GGCGCGGCCG TGCCCGACGA GCGGCTGCGC CTGATGTTCG TCTGCGCGCA TCCGGCCATC
GATGCGGCGG CGCGCGCGCC GCTGATGCTG CAGACCGTGC TCGGGCTCGA CGCGGCCCGC
ATGGCCGGTG CCTTTCTCAC CGCGCCTTCC ACGCTGGGCC AGCGGCTGGT GCGGGCCAAG
GCACGCATCC GGGCCGCTGG CATTCCCTTC GAGTACCCGC AGGCGCGCGA ACTTCCGCAG
CGGCTGCAGG ACGTGCAGGG CGGCATCTAC GCCGCCTACG GCACCGGCTG GGACGACGTC
GACGGCGCCG ACGCCCTGCC GCGCGGCCTC ACCGCCGAGG CCATCGACCT CGGCCGCATC
CTGTGCAGCC TGATGCCCGA TGAGCCCGAG CCGCTGGGCC TGCTCGCGCT GATGCTCTTC
TGCGAAAGCC GCGCCGCGGC CCGGCGCAGC GAGGCCGGCG CCTACGTACC GCTCGACCAG
CAGGACCCGC TGCGCTGGAA CCCCGACCTG CTCGCGGAGG CCGAACGCTG CCTGCGCCGG
GCCTCGGAGA TGAAATCGCT CGGCCCCTAC CAGCTGGAGG CCGCCATCCA GTCAGCCCAT
TGCGAGCGCC GCGTGGGTGC GCCCGTGCCG CCCGAAGTGC TGGTGTCGCT CTACGAAGGA
TTGCTGGCGC TGCGGCCCAG CATCGGTGCC CAGGTCAGCC TGGCCTGCGC ACTGGCCAAT
GCGCGCGGCC CCGACGTCGG CCTGCGCGCG CTGGAGGCCA TGCCGGCGGC CGAGGTGCAA
AGCTACCAGC CGTTCTGGGC CGCCCGCGCG CACCTGCTCG CGGCCGGCGG TGCGCGCGCC
GCGGCACGCC AGGCCTATGA GCGCGCGATC GGCCTCAGCA GCAACGCCGC CGTGCGCGCC
TACCTCAACG CAATGTCGGA ACGGCTTTGA
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| Protein sequence | MNHPAAHQAA ERAARESYGR LLAILSARTH DIAASEDALA EAFARALERW PADGIPAQPE
AWLLSVARHR KLDAWRHSRV QDDATQSLLL LAGEMDDAPE GAAVPDERLR LMFVCAHPAI
DAAARAPLML QTVLGLDAAR MAGAFLTAPS TLGQRLVRAK ARIRAAGIPF EYPQARELPQ
RLQDVQGGIY AAYGTGWDDV DGADALPRGL TAEAIDLGRI LCSLMPDEPE PLGLLALMLF
CESRAAARRS EAGAYVPLDQ QDPLRWNPDL LAEAERCLRR ASEMKSLGPY QLEAAIQSAH
CERRVGAPVP PEVLVSLYEG LLALRPSIGA QVSLACALAN ARGPDVGLRA LEAMPAAEVQ
SYQPFWAARA HLLAAGGARA AARQAYERAI GLSSNAAVRA YLNAMSERL
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