| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3468 |
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| Symbol | |
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| ID | 7972579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3652713 |
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| End bp | 3653702 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794052 |
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| Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
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| Protein accession | YP_002945351 |
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| Protein GI | 239816441 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
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| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0436761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCCCT CCGCTGCCGC CTCCGGCCTT CCTGAAAACC CGACATACAT CGCGCTCGCG
GGGCCGACCG CCTCCGGCAA GACGGCGGTG GCGCTCGCGC TGGCGCGGGT GCGCCCGGTG
GAGATCGTCA GCGTCGATTC GGCGCTGGTC TATCGCGGCA TGGACATCGG CACCGCCAAG
CCCAGCCGGG CCGAGCAGGC CGCCGTGCCG CACCACCTGA TCGACATCCT CGATCCGCGC
GAAAGCTACA GCGCCGCCGC CTTCGTGGCC GACGCGACAC GGCTCATCGG CGAGATCCGC
GGGCGCGGCG CCCTGCCGCT GCTGGTGGGC GGCACCATGC TCTATTTCAA GGCGCTGTTC
GACGGCATCG ACGCCATGCC CGCCGCCGAT GCCGCCGTGC GCGCGCGCAT CGACGCCGAA
GCCGCCGCGC TGGGCTGGCC CGCCATGCAT GCGCGGCTCG CCAAGGTCGA CTCCGTGACG
GCCGCGCGCC TGGCACCGCA GGACAGCCAG CGCATCCAGC GTGCGCTCGA GGTGTGGGAA
AGCAGCGGCC AGCCCTTGTC GAGCTTTCAT GCCGGCGACA AAGACAAGGC AGTGAAGGGA
TTGGCCGGCG GCGTGCTGTT CTCGCTCGAA CCCACCGACC GCGCCTGGCT GCATGCGCGC
ATTGCCGGGC GTTTCGACGC CATGCTGGCC GCCGGCTTCC TCGACGAGGT CAGGGCGCTG
CGCGCACGCG GCGATCTTTC CACCGAGCTT CCCTCGATGC GCTGCGTGGG CTACCGGCAG
GCCTGGGAAA TGCTCGACGC ATGCGGCGGC GCGCAGCCCG ATGCCAAGGC CGTCGGCACG
CTGCGCGAGC GCGGCATCGC GGCCACGCGC CAGCTCGCCA AGCGGCAGAT CACCTGGCTG
CGCAGCATGC CGGCGCGCAC CGTCATCGCC TGCGACGCGC CCGGCGCGTT GCAGACCGCT
GTTCAACGCA TCGCAGGCAC CACCGCATGA
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| Protein sequence | MPPSAAASGL PENPTYIALA GPTASGKTAV ALALARVRPV EIVSVDSALV YRGMDIGTAK
PSRAEQAAVP HHLIDILDPR ESYSAAAFVA DATRLIGEIR GRGALPLLVG GTMLYFKALF
DGIDAMPAAD AAVRARIDAE AAALGWPAMH ARLAKVDSVT AARLAPQDSQ RIQRALEVWE
SSGQPLSSFH AGDKDKAVKG LAGGVLFSLE PTDRAWLHAR IAGRFDAMLA AGFLDEVRAL
RARGDLSTEL PSMRCVGYRQ AWEMLDACGG AQPDAKAVGT LRERGIAATR QLAKRQITWL
RSMPARTVIA CDAPGALQTA VQRIAGTTA
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