Gene Vapar_3466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3466 
Symbol 
ID7972577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3649627 
End bp3651495 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content70% 
IMG OID644794050 
ProductDNA mismatch repair protein MutL 
Protein accessionYP_002945349 
Protein GI239816439 
COG category[L] Replication, recombination and repair 
COG ID[COG0323] DNA mismatch repair enzyme (predicted ATPase) 
TIGRFAM ID[TIGR00585] DNA mismatch repair protein MutL 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.52693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGCCC TTCCCTCTTC CATTCCGTCC CCCCAGCGCC GTCCGATCCG CGAACTTCCC 
GACGAGCTGA TCAGCCAGAT CGCCGCGGGC GAAGTGGTCG AACGCCCGGC CTCCGTGGTG
CGTGAACTGC TCGACAACGC GCTGGACGCC GGCGCGCGCC AGGTCACGGT GCGGCTGGCT
TCGGGCGGCG TGCGGCTGAT CTCGGTGGAG GACGACGGCC AGGGCATTCC GCGCGAAGAG
CTCACGGTGG CACTGCGCCG CCATGCCACC AGCAAGATCG CGAGCCTGAA CGACCTCGAG
ACCGTGGGTA CCATGGGCTT TCGCGGCGAG GCGCTCGCGG CCATCAACGC CATCGCGGAG
CTCAGCATTC TTTCGCGCTT TGCGGGTGCC GACGGCGCCT TCGCGCTCGA CGGCCGCACC
GGCGAACTGC GGCCGGTGGC CCGCGCCGTC GGCACCACGG TCGAGGTGCG CGAGCTTTTC
TTCGCGACCC CCGCACGGCG CAAGTTCCTG AAGACCGACG CCACCGAGCT GGCCCACTGC
ATCGAGGCCG TGCGCCGCCA TGCGCTGGCG CGGCCGGAGG TCGGCTTTTC GGTGTGGCAC
GACGGCAAGC TGATGGAACA GTGGCGCGCC GCCGACCGGC GCGAGCAGCG CCTGGCCGAT
GCGCTCAGCG ACGACTTCGT GGCGCAGAGC GTGGCCGTCG AGTACATGGG CGGCGCGGTG
CGCGTGGCCG GGCGCGCCGG CATTCCGGAT GCGGCGCGCT CGCGCGCCGA CCAGCAGTTC
TTCTACGTCA ACGGCCGCTT CGTGCGCGAC AAGGTGCTCT CGCATGCCGT GCGCAGCGCC
TATGAAGACG TGCTGCACGG CCAGCGCCAG CCCGTGTACG CGCTGTACCT CGAAATCGAC
CCGTCGCGCG TCGACGTGAA CGTGCATCCG ACCAAGATCG AGGTGCGCTT TCGCGATGGC
CGCGAGGTGC ACCAGGCGGT GCGCCACGCG ATCGAGAACG CGCTTGCCGC ACCGCGTGCA
GGCGATGCCG TTACACCGGC AGCGCCGCAG CCCTTTTTCA AGCCGAACGT GCCCGCTTCG
GGTGCAACCT GGGCCCAGCC GGGCATCAAT TTCGTGGCGG CGGAGCGCGG CGCCGGCGAT
TTCGAGGCCC TGTGGCCCCA GCGAACCGCC GAATCGGGCC CTTCCCTTTG GCCTGCGGCC
GGTGCGGCGC CTGCGGCGTT CCGGGCCCCT GCCGGGCTGC CGGCCGAATC GCCAGGCGCA
GACACCCCTG CCACCAGCGA GCATGCCTGG CCGCTGGGCC GCGCATTGGC GCAGTTGCAG
GGCATCTACA TCCTGGCCGA GAACAGCCAG GGCCTGATCG TGGTCGACAT GCACGCGGCG
CACGAACGCA TCGTCTACGA GCGGCTCAAG ACCCAGCTCG ACGGCGCCGC CATCACGAGC
CAGCCGCTGC TGATCCCGGC CACCTTCGCG GCCACGCCCC AGGAAGTGGC CACCGCCGAG
GCCTGCGCCG CGGTGCTGCC CACGCTGGGG CTGGAAATCA CGCCGTTTTC GCCGCGCACC
CTTGCGGTGC GTGCGGTGCC GGGCACCCTG GCCGATGGCG ATCCGGTGGA GCTTGCGCGC
AGCGTATTGG CCGAACTGGC GCAGCACGAC GCCAGCACCG TGGTGCAGCG GGCGCAGAAC
GAATTGCTCT CGACCATGGC CTGCCATGGT GCGGTGCGGG CCAACCGCAG GCTCACGATC
GACGAAATGA ACGCTTTATT ACGTCAAATG GAAGCCACCG AGCGTTCGGA CCAGTGCAAC
CATGGCCGTC CGACCTGGCG GCAGCTGTCG ATTCGGGAGC TGGACGCGCT TTTTATGCGC
GGCAGATAG
 
Protein sequence
MSALPSSIPS PQRRPIRELP DELISQIAAG EVVERPASVV RELLDNALDA GARQVTVRLA 
SGGVRLISVE DDGQGIPREE LTVALRRHAT SKIASLNDLE TVGTMGFRGE ALAAINAIAE
LSILSRFAGA DGAFALDGRT GELRPVARAV GTTVEVRELF FATPARRKFL KTDATELAHC
IEAVRRHALA RPEVGFSVWH DGKLMEQWRA ADRREQRLAD ALSDDFVAQS VAVEYMGGAV
RVAGRAGIPD AARSRADQQF FYVNGRFVRD KVLSHAVRSA YEDVLHGQRQ PVYALYLEID
PSRVDVNVHP TKIEVRFRDG REVHQAVRHA IENALAAPRA GDAVTPAAPQ PFFKPNVPAS
GATWAQPGIN FVAAERGAGD FEALWPQRTA ESGPSLWPAA GAAPAAFRAP AGLPAESPGA
DTPATSEHAW PLGRALAQLQ GIYILAENSQ GLIVVDMHAA HERIVYERLK TQLDGAAITS
QPLLIPATFA ATPQEVATAE ACAAVLPTLG LEITPFSPRT LAVRAVPGTL ADGDPVELAR
SVLAELAQHD ASTVVQRAQN ELLSTMACHG AVRANRRLTI DEMNALLRQM EATERSDQCN
HGRPTWRQLS IRELDALFMR GR