Gene Vapar_3465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3465 
Symbol 
ID7972576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3648790 
End bp3649458 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content63% 
IMG OID644794049 
ProductSNARE associated Golgi protein 
Protein accessionYP_002945348 
Protein GI239816438 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.133962 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATCA TCAGCTTTCT CGTCGACTTC ATCCTGCACG TCGACAAACA CCTCGAGGCC 
TTCGTCGTTG CCTACGGCCC CTGGGTCTAT GCGCTGCTCT TCCTGATCGT GTTCGTGGAG 
ACAGGCGCGG TGGTGATGCC TTTCCTGCCC GGCGACTCGC TGCTGTTCAT CGTGGGCGCG 
CTGTGCGGCG TGGGGCTCAT GAGCTTTCCG CTGGCCTGCG CAGTGCTCAT TGCGGCGGCC 
ATCCTGGGCG ACCAGTGCAA CTACAGCATC GGCCGCTACT TCGGGCCCAA GGTCTTCAAG 
TGGGAGGACT CGCGCTTCTT CAACCGCAAG GCCTTCGACC AGGCCCATGC GTTCTACGAG 
CGCTATGGCG GCATCACGAT CATCCTTGCG CGCTTCATGC CCTTCATTCG CACCTTCGCG 
CCCTTCGTGG CCGGCGTGGC CGAAATGAGC CGCGCGAAGT TCACCATGTT CAATGTGGTG 
GGCGGGCTGA TCTGGGTGCT GGGCATCGCG ACGGCGGGCT ACTTCTTCGG CAACCTGCCG 
TTCGTTCGCG AGCATCTCGA CAAGATCATC TGGGCGCTGA TCTTCGTGCC GGGCCTGATC 
GCGATCTTCG GTGCCTGGCG CGCATCGCGT GCAGAGAAGG CGCGCGCGCA GCTGCCTTCG 
AAGGCTTGA
 
Protein sequence
MEIISFLVDF ILHVDKHLEA FVVAYGPWVY ALLFLIVFVE TGAVVMPFLP GDSLLFIVGA 
LCGVGLMSFP LACAVLIAAA ILGDQCNYSI GRYFGPKVFK WEDSRFFNRK AFDQAHAFYE 
RYGGITIILA RFMPFIRTFA PFVAGVAEMS RAKFTMFNVV GGLIWVLGIA TAGYFFGNLP 
FVREHLDKII WALIFVPGLI AIFGAWRASR AEKARAQLPS KA