| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3463 |
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| Symbol | |
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| ID | 7972574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3646737 |
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| End bp | 3648293 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794047 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_002945346 |
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| Protein GI | 239816436 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.159422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCCA GCGGCCTCAA GCGGCGCGTG CTGCTGCAGG GCGGCAGCAT CGCGCTGATG
CTCGGCGTGC ACCAGATCGC GCGCGGCGCC ACCATCCTCG CAGTGCGCGT GTGGCCCGCG
GCCGACTACA CGCGCGTGAC CATCGAATCC GATGCGCGGC TGCATTCGCA GCAGCTGGTC
GTGGGCAGTC CGCCGCGGCT GGCGGTGGAC ATCGAAGGCA TCGATCTCAA CCCCGAGCTG
CGCGACCTGG TCGGCAAGAT CAAGCCGGGC GACCCGTACA TCAACGGCCT GCGCGTCGGC
CAGAACGCAC CCAAGGTGGT GCGCATCGTG TTCGACCTCA AGCAGGCCGT GGTGCCGCAG
GTGTTCTCGC TGGCGCCCAT TGCCGCGTAC AAGCACCGGC TGGTGCTCGA CCTCTACCCC
GAAAAAGCCA TCGACCCGAT GGAAGCGCTG ATCACCGAGC GCCTGCGCGA AGCGCCGCGC
GGCAGCAGCG CCGGCGGCAG CAACGGTGCC GTGGCAAGCG CACCGTCGGT GCCGCCGCCG
GCCGCGCCCT CCTCGGGCCT CGCGCCCGAC GGCGGGCCGC CGATCCTCGT GCGGCCGTCG
CCCAACGTGC CAGCGCCGAT CCCCGCGCCC GGCAGCATCG CGCCATCTCC CGCCCGCCCG
CCGGCCACGG CGGCCGGGCC CGCACCCGAT CCGCTGGGCG AGCTGATGGC GCAGCAGTCG
ACGCGGCCCG GCCCCGCCGT GCCACCCGCA CCGCCCATTG CGCCTGCCGT ACCCGTGGCG
CCTCCCGCGC CCCTCGCGTC CGCGCGCGGC AGCGCCACCG CGAGCCGCAC CGACCGCATC
ATCATCGTGG CGCTCGATCC CGGCCATGGC GGCGAAGACC CGGGCGCCAT CGGCCCCAAC
GGCACGCGCG AAAAAGACAT CGTGCTGCAG ATCGCGCACC GCCTGCGCGA CCGCATCAAC
GCGAGCAGCG TCAACGGCAA CCCGATGCGC GCGTTTCTCA CGCGTGACGC CGATTTTTTC
GTGCCGCTGG GCGTGCGCGT GCAGAAGGCG CGGCGCGTGC AGGCCGACCT CTTCGTGAGC
ATCCATGCCG ATGCGTTCAC CACGCCCGCC GCGCGCGGCG CGAGCGTCTT TGCGCTGAGC
CAGAGCGGCG CCTCGAGCAG CGCCGCGCGC TGGCTCGCCA ACAAGGAAAA CGAAGCCGAC
AAGGTCGGCG GCGTGAACGT GGGCAACCAC GAAGTGCAGG TGCAGCGCGC GCTGCTCGAC
ATGAGCACCA CGGCGCAGAT CAACGACAGC CTCAAGCTCG GCGGCGCCAT GCTCGGCGAG
ATCCGCGGCA TCGGCGCGCG GCTGCACAAG CCCGCGGTCG AGCAGGCCGG CTTCGCGGTG
CTCAAGGCAC CCGATATCCC GAGCGTGCTG GTCGAAACGG CGTTCATCAG CAATCCCGAA
GAAGAAGCCA ACCTGCGCAG CGTCAGCTAC CAGGAAAACC TTTCCGATGC GCTGATGCGC
GGCATCCAGC GCTACTTTGC GCAGAACCCG CCGCTCGCGC GCAGCCGCCA GCTCTGA
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| Protein sequence | MKASGLKRRV LLQGGSIALM LGVHQIARGA TILAVRVWPA ADYTRVTIES DARLHSQQLV
VGSPPRLAVD IEGIDLNPEL RDLVGKIKPG DPYINGLRVG QNAPKVVRIV FDLKQAVVPQ
VFSLAPIAAY KHRLVLDLYP EKAIDPMEAL ITERLREAPR GSSAGGSNGA VASAPSVPPP
AAPSSGLAPD GGPPILVRPS PNVPAPIPAP GSIAPSPARP PATAAGPAPD PLGELMAQQS
TRPGPAVPPA PPIAPAVPVA PPAPLASARG SATASRTDRI IIVALDPGHG GEDPGAIGPN
GTREKDIVLQ IAHRLRDRIN ASSVNGNPMR AFLTRDADFF VPLGVRVQKA RRVQADLFVS
IHADAFTTPA ARGASVFALS QSGASSSAAR WLANKENEAD KVGGVNVGNH EVQVQRALLD
MSTTAQINDS LKLGGAMLGE IRGIGARLHK PAVEQAGFAV LKAPDIPSVL VETAFISNPE
EEANLRSVSY QENLSDALMR GIQRYFAQNP PLARSRQL
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