Gene Vapar_3461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3461 
Symbol 
ID7972572 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3645157 
End bp3646245 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content68% 
IMG OID644794045 
Productiron-sulfur cluster binding protein 
Protein accessionYP_002945344 
Protein GI239816434 
COG category[C] Energy production and conversion 
COG ID[COG1600] Uncharacterized Fe-S protein 
TIGRFAM ID[TIGR00276] iron-sulfur cluster binding protein, putative 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.265251 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATCGTCA GCCATCCACT CGTTGCTCGT ATTCAGGCAT TGGCCCGGGA ACTCGGATTC 
TCCCAAATCG GAATCGCGGG CGTCGATTTA TCGAGCGCCG AGGAAGGTCT GATGCAATGG 
CTGGCCCATG GGTTCCATGG CGAGATGAAA TACATGGCAA CGCACGGCAC GCGCCGCGCG 
CGGCCGGCCG AGCTGGTGCC GGGCACGGTG AGCGTCATCA CGGCGCGCAT GGACTACCTG 
CCGCGCGGCA CGCCGCTCGA CGATTGGCAG GCCGTGGAGT TCGATCGCCT CTCGCGGCCC 
GGCGAGGCCA TCGTCTCGGT CTATGCGCGC GGCCGCGACT ATCACAAGGT GATGCGTGCC 
CGGCTGGCCC GGCTGGCCGA GCGCATCGCC GAAGAAGTGG GCCCGTTCGG CCACCGCGCC 
TTCACCGATT CGGCGCCGGT GCTCGAAGCC GAGCTTGCAT CCCGCAGCGG CCAGGGCTGG 
CGCGGCAAGC ACACGCTGGT GCTGGACCGC AGCGCGGGCT CGATGTTCTT CCTGGGCGAG 
ATCTACGTCG ACATGGCGCT GCCCGAAAGC GAGCCGGTCA GCGCGCACTG CGGCAGCTGC 
AGCGCCTGCA TCGACGTGTG CCCGACCAAG GCGATCGTCG CGCCGTACCG GCTCGATGCG 
CGGCGCTGTA TTTCGTACCT CACCATCGAG CACGGCGGGC CGATTCCGCT GGAGCTTCGG 
CCGCTGATGG GCAACCGCAT CTACGGCTGC GACGATTGCC AGCTGATCTG CCCCTGGAAC 
AAGTTCGCGA AGAAGAGCGC GCTGCCCGAC TTCGATGCGC GCGAGGGGCT CACCGGCCAG 
TCGCTGGCCG CGCTCTTTGC CTGGAGCGAA GAGGAATTTC TGCGCTTCAC CGAAGGCAGC 
CCGATCCGCC GCATCGGCCA TGAACGCTGG CTGCGCAACA TCGCCGTGGC CCTTGGCAAC 
GCACTGCGCG CGGGCGAAAG CGGCGCCGCA GAGGCCCTGG CCACGCGGGC CTCGGACCCG 
AGCGAACTGG TGCGCGAGCA CGTGGCGTGG GCGCTGGCGC AGCGCCCCGA AACGCCGAAC 
GCGTCCTAG
 
Protein sequence
MIVSHPLVAR IQALARELGF SQIGIAGVDL SSAEEGLMQW LAHGFHGEMK YMATHGTRRA 
RPAELVPGTV SVITARMDYL PRGTPLDDWQ AVEFDRLSRP GEAIVSVYAR GRDYHKVMRA 
RLARLAERIA EEVGPFGHRA FTDSAPVLEA ELASRSGQGW RGKHTLVLDR SAGSMFFLGE 
IYVDMALPES EPVSAHCGSC SACIDVCPTK AIVAPYRLDA RRCISYLTIE HGGPIPLELR 
PLMGNRIYGC DDCQLICPWN KFAKKSALPD FDAREGLTGQ SLAALFAWSE EEFLRFTEGS 
PIRRIGHERW LRNIAVALGN ALRAGESGAA EALATRASDP SELVREHVAW ALAQRPETPN 
AS