Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3456 |
Symbol | |
ID | 7972567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3640540 |
End bp | 3641130 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644794040 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_002945339 |
Protein GI | 239816429 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.659534 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAGCG CCATCGCCCC CTCGACCGCA CTCGCCGCCG GCAGCACCCG GGAGCAGATT CTCGGGGTGG CGCGCCGCCT GATCGAAACG CGCTCCTACC TGGGCTTCAG CTTCCAGGAT GTGGCCGATG CGGTCGGCGT CCGCAAGGCG AGCCTGTACC ACCACTTTCC GACCAAGGAA GCGCTGGGCA TTGCGGTGAT CCGGCAGGCC ACGCAACTCT TCAAGGATTG GGACGCGGCG CGGGTGCGCA CGCCGAAGGA CGCGCTCGAA TCCTATTTCC GCATGTACCG CGACACGCTC AAGGCAGGCT CGGGCATGTG CCCCGCGGGA GCGCTGACGC CCGGCTGGGA TTGCATCGAC GAGGAACTGC GCCAGGCCGT GCAGGAACTG CGCAACACCC AGGTGCTGTG GCTCACGGGC GTGCTGGGCG CACTGGCGCC GGCCTGGCAG AAGAAGGGCG CATCGCTTGC ATCGCAGGCG GCCTATGTGT TCTCGGTGTG TCAGGGCGCG CTGCTCGCAT CGCGCATGAC GGGCCGCGTC GAAGACTTCG ACGAAGCCAT TGCGCAGCTC AGGAGTTCCT TGCCCGGCTG A
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Protein sequence | MTSAIAPSTA LAAGSTREQI LGVARRLIET RSYLGFSFQD VADAVGVRKA SLYHHFPTKE ALGIAVIRQA TQLFKDWDAA RVRTPKDALE SYFRMYRDTL KAGSGMCPAG ALTPGWDCID EELRQAVQEL RNTQVLWLTG VLGALAPAWQ KKGASLASQA AYVFSVCQGA LLASRMTGRV EDFDEAIAQL RSSLPG
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