Gene Vapar_3448 details

Gene Information

• Locus tag: Vapar_3448
• ID: 7972559
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3634024
• End bp: 3634650
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794032
• Product: nicotinamide mononucleotide transporter PnuC
• Protein accession: YP_002945331
• Protein GI: 239816421
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG3201] Nicotinamide mononucleotide transporter
• TIGRFAM ID: [TIGR01528] nicotinamide mononucleotide transporter PnuC

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGAGT TCTTCTCGGC CCCCGCATTC GCGCTCTGGG GGTCACCGGT CAGCTGGCTC 
GAACTCGTGG CGGCGGTGCT GGCGCTTGCG ATGGTCGGCT GCAACATGCG CGAGATCCAC 
TGGGGCTGGC CGCTGGCGAT CCTCAGTTCG CTGCTTTACG TGGCCGTGTT CGCGCAGGCA 
CGCATCTACG GCGACGCCTC GCTGCAGGTG TTCTTCGCCG TGGTCGCGCT CTGGGGCTGG 
TCGCAATGGC TGCGCGGCCA CCGCGCCGAT GGCAGCGCAT TGCGCGTGAG CCGGCTTTCG 
CCGCGCGGCG TGGCGCTGGC ACTCGCGGCC TGCGCACTGG CATGGCCCGC GGTCGCGCTT 
TTCCTGCGCC GCTTCACCGA CACCGACGTG CCCTGGTGGG ACGGCTTCTC GACCGGGCTC 
AGCCTCGTCG GCCAGTTCCT GCTCGGGCGC AAGTTCATCG AGAACTGGCT GGTGTGGCTG 
GCGGTGAACG TCGTGAGCGT GGGTCTCTTC ATCCACAAGG GCCTGTGGCT CACGGTCGGG 
CTCTATGCCG TGTTCGCGGT GCTCAGCGTG GCGGGCTTTC TTGCGTGGCG TGCGCGCATG 
CACGGCGGGG CGGCAGCGCG CGCATGA 

 

Protein sequence

MPEFFSAPAF ALWGSPVSWL ELVAAVLALA MVGCNMREIH WGWPLAILSS LLYVAVFAQA 
RIYGDASLQV FFAVVALWGW SQWLRGHRAD GSALRVSRLS PRGVALALAA CALAWPAVAL 
FLRRFTDTDV PWWDGFSTGL SLVGQFLLGR KFIENWLVWL AVNVVSVGLF IHKGLWLTVG 
LYAVFAVLSV AGFLAWRARM HGGAAARA