Gene Vapar_3439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3439 
Symbol 
ID7972550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3626570 
End bp3627070 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content70% 
IMG OID644794023 
Product17 kDa surface antigen 
Protein accessionYP_002945322 
Protein GI239816412 
COG category[S] Function unknown 
COG ID[COG3134] Predicted outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.976253 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTT CAACGCGCTT CATTTCCATT GCCGCTTCCG TGGTGGCGCT TGCCACGCTC 
ACGGCCTGCG TTGCTCCCGC GCCGGTCTAT CACACGACGC GCTATCCCTA CCAGGCGCCG 
CCGCAGGCGG TGCCCTACCA GGAGGCGGCC TATGTCGAAT ACGGCCACGT CGCCAACATC 
GAGGTGCTGC GCAGCGAAAC CGGGGGCACC GGCACCACCG GCGGCGGCGC GGTGGCGGGC 
GGTGTGCTCG GCGGCGTGGT GGGCAACCAG TTCGGGCACG GCAGCGGCCG CGCCGCGGCC 
ACCGCGCTGG GCATCGTGGG CGGCGCGCTG CTGGGCAACA CCATCGAGGG ACAGGCCAAC 
GGGCCGCGCG CCTACGAGAG CTACCGCATC TCGGTGCAGA CCGACCGCGG CGGCTACCGT 
GCCTTCGACG TGCAGCATCC GGGCGACCTG CGCATCGGCG ACCGCGTGCG CATCGACAAC 
GGCCAGATCT CGCGCATGTA G
 
Protein sequence
MKISTRFISI AASVVALATL TACVAPAPVY HTTRYPYQAP PQAVPYQEAA YVEYGHVANI 
EVLRSETGGT GTTGGGAVAG GVLGGVVGNQ FGHGSGRAAA TALGIVGGAL LGNTIEGQAN 
GPRAYESYRI SVQTDRGGYR AFDVQHPGDL RIGDRVRIDN GQISRM