Gene Vapar_3438 details

Gene Information

• Locus tag: Vapar_3438
• ID: 7972549
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3625967
• End bp: 3626491
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644794022
• Product: fkbp-type peptidyl-prolyl cis-trans isomerase
• Protein accession: YP_002945321
• Protein GI: 239816411
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAATCT CTGAACAATG CGTGGTCGGC CTGACCTGGA CGATGAAAGA CACCCTGGGC 
GAAGTTCTGG ACGTGCTCGA CGAACCGGTG GAATTCATGG TGGGAGGCGA TGACCTCTTC 
GACGTGATCG AAGCCGCCCT GCAGGGCCAC GAGCCCGGCG CACGGGTGCA ATTGCAGCTC 
GAGCCCGAAC AGGGCTTCGG CGACTTCAAC GACCAGCTGC TCTTTCTGGA GCCGCGTTCG 
CTGTTCCCCG AAGGCACCGA GGAAGGCATG ACCTTCGACG GCGCCGCCCT GCCCCCAGGC 
GTGAGCGACG CCATGCCCAA GGACGTGATC TACACCGTGG CCGAGATCTA CCCGGACCAC 
CTGGTGCTCG ACGGCAACCA TCCGCTCGCC GGCATCGCGA TCCGGCTCGA CATCACGGTG 
CGCTCGGTGC GCGAGGCCAC GGAAGAAGAA GTCGGCCGCG GCACGGCGGG CACGGCCTTC 
TTCAAGGTGC CGCCCACGGC GCCCGGCAAC GACCTGCTGC ACTGA 

 

Protein sequence

MEISEQCVVG LTWTMKDTLG EVLDVLDEPV EFMVGGDDLF DVIEAALQGH EPGARVQLQL 
EPEQGFGDFN DQLLFLEPRS LFPEGTEEGM TFDGAALPPG VSDAMPKDVI YTVAEIYPDH 
LVLDGNHPLA GIAIRLDITV RSVREATEEE VGRGTAGTAF FKVPPTAPGN DLLH