| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3428 |
|---|
| Symbol | |
|---|
| ID | 7972539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3616721 |
|---|
| End bp | 3618718 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794012 |
|---|
| Product | DNA topoisomerase IV subunit B |
|---|
| Protein accession | YP_002945311 |
|---|
| Protein GI | 239816401 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.920156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACTC CCCCCAAGAC TCCCCCCAGT TCATCGTCCG CGTCCTCCGG GTACTCGGAA
GGCTCCATCC GCGTGCTCAA GGGCCTGGAG CCCGTGAAGC AGCGCCCGGG CATGTACACC
CGGACCGACA ACCCGCTGCA CGTCATCCAG GAAGTGCTCG ACAACGCCGC CGACGAGGCG
CTGGCGGGCC ACGGCAAGAA GATCAAGGTC ACGCTGCATG CCGACAACTC GGTCAGCGTC
GAGGACGACG GCCGCGGCAT TCCCTTCGGC CTGCATCCTG AAGAAAAAGC CCCCGTGGTC
GAACTGGTCT ACACCCGGCT GCACGCCGGC GGCAAGTTCG ACAAGGGCTC GGGCGGCGCC
TACAGCTTCT CGGGCGGCCT GCACGGCGTG GGCGTGTCGG TGACCAACGC GCTGTCGAAG
CGGCTCGAAG TCACGACCCA CCGCGAAGGC TCGGTCGCCA GGCTGGCCTT CAGCGGCGGC
GACGTGATCG AGCCGCTGCA GGTGCGCAAG CTCGAAGCCG GCGAGCGCAA GCAGGGCACC
ACCGTGCGCG CCTGGCCCGA CGCCAAGTAT TTCGAGACCG CCGCGCTGCC GATGGCCGAG
CTCACCCACC TCTTGCGCAG CAAGGCCGTG CTGATGCCGG GCGTGAGCGT CACGCTCACG
GTCGAGAAGA CCAAGGAAAC CCAGCAGTGG CTCTACAAGG GCGGCCTGAG CGACTACCTG
ATGCAGACGC TCAACGGCGA CCCCGTGATC CCGCTGTTCG AAGGCAGCGG CCACGCCGAC
AAGAACGCCG ACAACTTCGC CGAGGGCGAG GGCGCCGACT GGTGCGTGGC CTTCACCGAA
GACGGCCAGC CGGTGCGCGA GAGCTACGTC AACCTGATTC CCACCAGCGC CGGCGGCACG
CACGAGAGCG GCCTGCGCGA CGGCCTGTTC ACCGCGGTGA AGGGCTTCAT CGAGCTGCAC
TCGCTGCTGC CCAAGGGCGT GAAGCTGCTG CCCGAGGACG TGTTCGCACG CGCCTCGTAC
GTGCTGAGCG CCAAGGTGCT CGACCCCCAG TTCCAGGGCC AGATCAAGGA ACGCCTCAAT
TCGCGCGATG CCGTGCGCCT GGTGTCGAGC TTCGTGCGAC CGGCGCTCGA GCTCTGGCTC
AACCAGCACG TCGACTACGG CCGCAGGCTT GCCGAGCTGG CCATCAAGGC CGCGCAGACG
CGCCAGCGCG CCGGCCAGAA GGTCGAGAAG CGCAAGGGCT CCGGCGTGGC CGTGCTGCCC
GGCAAGCTGA CCGATTGCGA GAGCAAGGAC ATCAGCCACA ACGAAGTCTT CCTGGTCGAG
GGCGACTCCG CCGGCGGCAG CGCCAAGATG GGCCGCGACA AGGAAAGCCA GGCCATCCTG
CCGCTGCGCG GCAAGGTGCT CAACACCTGG GAAGTGGAGC GCGACCGGCT GTTCGCCAAC
ACCGAAATCC ACGACATCTC GGTGGCCGTG GGCGTCGATC CGCACGGCCC CACCGATTCG
CCCGACATGA GCGGCCTGCG CTACGGCAAG ATCTGCATCC TCTCGGATGC CGACGTGGAC
GGCTCGCACA TCCAGGTGCT GCTGCTCACG CTGTTCTTCC GCCACTTTCC GAAACTCATC
GAAGCCGGCC ACGTGTATGT CGCAAAGCCG CCGCTGTTCC GCGTCGATGC GCCTGCGCGC
GGCAAGAAGC CGGCCTCCAA GGTCTATGCG CTCGACGAGG GCGAACTCAC GGCCACGCTC
GACAAATTGC GTAAAGATGG CGTGCGCGAA GGCGCCTGGA GCATCAGCCG CTTCAAGGGC
CTGGGCGAAA TGAGCGCGGA ACAATTGTGG GAAACCACGC TCAATCCCGA TACCCGACGC
CTGATGAAGG TGCAATTGGG GCGCTTCGAC TTCAGCTCCA CCCAGGGCGA GATCACCAAG
CTCATGGGCA AGGGCGAGGC AGCCGCCCGG CGCGAACTGA TGGAACTGCG CGCCGACGAT
GTCGACATCG ATGTTTGA
|
|---|
| Protein sequence | MATPPKTPPS SSSASSGYSE GSIRVLKGLE PVKQRPGMYT RTDNPLHVIQ EVLDNAADEA
LAGHGKKIKV TLHADNSVSV EDDGRGIPFG LHPEEKAPVV ELVYTRLHAG GKFDKGSGGA
YSFSGGLHGV GVSVTNALSK RLEVTTHREG SVARLAFSGG DVIEPLQVRK LEAGERKQGT
TVRAWPDAKY FETAALPMAE LTHLLRSKAV LMPGVSVTLT VEKTKETQQW LYKGGLSDYL
MQTLNGDPVI PLFEGSGHAD KNADNFAEGE GADWCVAFTE DGQPVRESYV NLIPTSAGGT
HESGLRDGLF TAVKGFIELH SLLPKGVKLL PEDVFARASY VLSAKVLDPQ FQGQIKERLN
SRDAVRLVSS FVRPALELWL NQHVDYGRRL AELAIKAAQT RQRAGQKVEK RKGSGVAVLP
GKLTDCESKD ISHNEVFLVE GDSAGGSAKM GRDKESQAIL PLRGKVLNTW EVERDRLFAN
TEIHDISVAV GVDPHGPTDS PDMSGLRYGK ICILSDADVD GSHIQVLLLT LFFRHFPKLI
EAGHVYVAKP PLFRVDAPAR GKKPASKVYA LDEGELTATL DKLRKDGVRE GAWSISRFKG
LGEMSAEQLW ETTLNPDTRR LMKVQLGRFD FSSTQGEITK LMGKGEAAAR RELMELRADD
VDIDV
|
|---|
| |