| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3427 |
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| Symbol | |
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| ID | 7972538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3615807 |
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| End bp | 3616694 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794011 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002945310 |
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| Protein GI | 239816400 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.381916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCCGT TGCTCCTGGC CCTGCTGCTG TGCGCGCAGC AGGGGCTCGC GCACGCCGCT
GACGTCTACG GCTACATCGA CAGCAAGGGC GTGGCGCACT TCGCGTCGGA AAAGATCGAC
GAGCGCTACC AGGTCTTCTT TCGCCGCGGC CAGAGCTTCG ACACCGCGCA GGGCCTGGCG
CCGTTCGCGC GCGGCGGGCG CAAGCTCGAT GGAAAGGTGC CGCAGGCCTC GCAAACCCTG
CTGGCGCTGT TCGAGGCCTC GCCAAGCTAC AAGACCGCCA AGGCCGCGCT GCGCGATGCG
TCGAACAAGC ATTCGATCGA CTACGAACTG CTGCAGGCGC TGATCGCCAC CGAATCGGGC
TTCGATGCCC AGGCCGTTTC GCCCAAGGGC GCGATGGGGC TCATGCAGCT CATGCCGGCC
ACCGCGCAGC GCTATGGCGT GGCAGCCGAC AAGCGCAGCA CCATCGAGAA GAAGCTGTTC
GACCCGCGCA TCAACATTGC CGCGGGCTCG CGCTACCTGC GCGACCTGAT CGCGATGTTC
CCGGGCCAGA TCGAGCTGGC CCTTGCTGCC TACAACGCGG GCGAGGGCGC GGTGCAGCGC
GCGGGCAACA AGATCCCCAA CTACAAGGAA ACGCAGAACT ACGTGCAGAC CGTGCTGCAG
CTCTACGCCT ACCTCAAGCC GTCGGCCGGG GGCTCGGCCA TGGCGGGCGG CGGCGCGCGC
GGCGGCAAGG CGCCGGGGCG CATCCGCATG GAACTCACGG TGCCCAAGGG CGGCGCCCTG
GGCCGCGGCA ACATGCCGCC CGGCTCGCCG GGCGCCATGC CGGCCATGCC CGATGCGCCC
GAGCCATCGG CGGTGCCGGA CAGCGGCTCG GACGCGCCGG TGTCCTGA
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| Protein sequence | MRPLLLALLL CAQQGLAHAA DVYGYIDSKG VAHFASEKID ERYQVFFRRG QSFDTAQGLA
PFARGGRKLD GKVPQASQTL LALFEASPSY KTAKAALRDA SNKHSIDYEL LQALIATESG
FDAQAVSPKG AMGLMQLMPA TAQRYGVAAD KRSTIEKKLF DPRINIAAGS RYLRDLIAMF
PGQIELALAA YNAGEGAVQR AGNKIPNYKE TQNYVQTVLQ LYAYLKPSAG GSAMAGGGAR
GGKAPGRIRM ELTVPKGGAL GRGNMPPGSP GAMPAMPDAP EPSAVPDSGS DAPVS
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