| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3425 |
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| Symbol | |
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| ID | 7972536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3612199 |
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| End bp | 3614595 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794009 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_002945308 |
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| Protein GI | 239816398 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.228617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGACT CCCAACCTCC GCTCGATCTC CAGGGTCCCA CCGACGGCGA CACCACCCTC
ACACTGGCCG ACTACGCACA GACCGCCTAC CTCGAATACG CGCTCAGCGT GGTCAAGGGC
CGCGCACTGC CCGACGTGTC CGACGGCCAG AAGCCGGTGC AGCGGCGCAT CCTGTATTCG
ATGTCGCGCA TGGGCCTGGG CTTCGGCGGC GCCAACGGCA CCGTGGGCGC CAAGCCGGTC
AAGAGCGCGC GCGTGGTCGG CGACGTGCTC GGCCGCTTCC ACCCGCACAG CGACCAGGCC
GCCTACGACG CGCTGGTGCG CATGGCGCAG GATTTTTCGC AGCGCTATCC CCTGGCCGAC
GGCCAGGGCA ACTTCGGCAG CCGCGACGGC GACGGCGCCG CGGCCATGCG CTACACCGAG
GCGCGCCTGG CCCGCATCAC CAGCCTGCTG CTCGACGAGA TCGACGAAGG CACGGTCGAC
TTCATCCCCA ACTACGACGG CAGCACCGAG GAGCCGCGCC TTCTGCCCGC GCGGCTGCCC
TTCACGCTGC TCAACGGCGC GAGCGGCATC GCGGTCGGCC TGGCCACCGA GATCCCGAGC
CACAACCTGC GCGAGATTGC CGATGCCTGC GTGGCGCTGA TCAAGTCGAA CGGCAAGCTC
AGCGACGAGG AACTGCTGCA GATCGTGCCC GGTCCCGACT ACCCGGGCGG CGCGCAGATC
ATCAGCGGCC CGGCCGACAT CGCCGACGCC TACCGCACCG GCCGCGGCTC GCTCAAGGTG
CGCGCGCGCT GGAAGATCGA GGACCTCGCG CGCGGCCAGT GGCAGCTGGT GGTCAACGAG
CTGCCGCCGG GCGTCAGCAC GCAGAAGGTG CTCGAGGAAA TCGAGGAAAT CACCAATCCG
AAGGTCAAGG CCGGCAAGAA GGCGCTCTCC GCCGACCAGA CCCAGCTCAA GGCCGCGATG
CTCTCGGTGC TCGACGTGGT GCGCGACGAG TCCAGCAAGG ACGCCGCGGT GCGCCTGGTG
TTCGAGCCCA AGACCTCGCG CATCAGCCAG GACGAGTTCA TCACCACGCT GCTCGCGCAG
ACCTCGCTCG AGACCTCGTC GCCGATCAAC CTCACGATGG TGGGCATCGA CGGCAAGCCC
ACGCAGAAGT CGCTGCGCCA GATGCTCAAC GAGTGGATCG CGTTCCGCGA GGTCACCGTC
GAGAAGCGCT CGCGGTTCCG CCTGAACAAG GTGATGGACC GCATCCACAT CCTCGAGGGG
CGGCAGCTGG TGCTGCTCAA CATCGACGAG GTGATCGCGA TCATCCGCGC GGCCGAGGAC
CCGAAGGCTG CGCTCATCGC GCGCTTCAAC CTCTCCGAAG TGCAGGCGGA AGACATCCTT
GAAATCCGGC TGCGCCAGCT TGCGCGGCTC GAAGGCATCA AGATCCAGCA GCAGCTCGAC
GAGTTGCGTA CGGAGCAGAA AAAGCTCGAA GACATCCTCG GCAGCCCCGC GGCACTGCGC
CGCCTGCTGG TGAAGGAAAT CGAGGCCGAT GCCAAGACCT TCGAAGACCC GCGCCGCACG
CTGATCCAGG CCGAGAAGCG CGCCGTGGCC GAAGTGAAGG TGGTCGACGA GCCCGTGACC
GTGATCGTCT CGCAGAAGGG CTGGGTCCGC GCGCAGAAGG GCTGGGCGAG CGAGAAGGCC
GCCGGCAACG GAGGCACTGC GCCCGAATAC AGCTTCAAGT CCGGCGACAC GCTCTACGGC
GCCTTCGAAT GCCGCAGCGT CGACACGCTG CTGGTGTTCG GCTCGGCCAA GGACAAGAGC
GTGCGCGTCT ACACCGTGCC CGTGGCCTCG CTGCCCGGCG CGCGCGGCGA CGGCCAGCCC
GTGACCACGC TCATCGAGCT CGATGCCGGC ACGCACGTCA CGCACTTCTT CGCGGGTCCG
GTGGGCGCCA GCGTGCTGCT GGCCAACACC GGCGGCTATG GCTTCATTGC CACCGTCGAG
AACATGATGT CGCGCCAGCG CGGCGGCAAG GCCTTCATCG ACGTGGGCGA GGGCGAGCAG
CTGTGCCGCC CGTCCCTGGT GGGCGGCGCG AGCGGCGCCG AGCCGATGCC GGCCGCCACG
CACGTGGCCT GCGCCTCGAC CGGCGGCCGC ATCCTGACCT TCGACATCGC CGAGCTCAAG
AGCCTGCCCA AGGGCGGCCG TGGGCTCACG CTGATCGACC TCGACGCCAA GGACACGCTG
GCGGGTGCCG CGGCCTACAC GCGCAGCGTG AAGATCGAAG GCATCGGCCG CGGCGGCAAG
GAGCGCGATG AAACCCTGGA AATCCGCACG CTCAACAATG CGCGCGGCAG CCGAGCGCGC
AAGGGCAAGG CGGCCGACCT CGGCTTCAAG CCGACGAGCA TCGTGCGGGT GCTGTGA
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| Protein sequence | MDDSQPPLDL QGPTDGDTTL TLADYAQTAY LEYALSVVKG RALPDVSDGQ KPVQRRILYS
MSRMGLGFGG ANGTVGAKPV KSARVVGDVL GRFHPHSDQA AYDALVRMAQ DFSQRYPLAD
GQGNFGSRDG DGAAAMRYTE ARLARITSLL LDEIDEGTVD FIPNYDGSTE EPRLLPARLP
FTLLNGASGI AVGLATEIPS HNLREIADAC VALIKSNGKL SDEELLQIVP GPDYPGGAQI
ISGPADIADA YRTGRGSLKV RARWKIEDLA RGQWQLVVNE LPPGVSTQKV LEEIEEITNP
KVKAGKKALS ADQTQLKAAM LSVLDVVRDE SSKDAAVRLV FEPKTSRISQ DEFITTLLAQ
TSLETSSPIN LTMVGIDGKP TQKSLRQMLN EWIAFREVTV EKRSRFRLNK VMDRIHILEG
RQLVLLNIDE VIAIIRAAED PKAALIARFN LSEVQAEDIL EIRLRQLARL EGIKIQQQLD
ELRTEQKKLE DILGSPAALR RLLVKEIEAD AKTFEDPRRT LIQAEKRAVA EVKVVDEPVT
VIVSQKGWVR AQKGWASEKA AGNGGTAPEY SFKSGDTLYG AFECRSVDTL LVFGSAKDKS
VRVYTVPVAS LPGARGDGQP VTTLIELDAG THVTHFFAGP VGASVLLANT GGYGFIATVE
NMMSRQRGGK AFIDVGEGEQ LCRPSLVGGA SGAEPMPAAT HVACASTGGR ILTFDIAELK
SLPKGGRGLT LIDLDAKDTL AGAAAYTRSV KIEGIGRGGK ERDETLEIRT LNNARGSRAR
KGKAADLGFK PTSIVRVL
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