| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3419 |
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| Symbol | |
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| ID | 7972530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3605989 |
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| End bp | 3606660 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794003 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945302 |
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| Protein GI | 239816392 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.705038 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTACC AGTTTCAATT CGACGCCGTC TTCGCTGCCT GGCCGCTGCT GCTCAAGGGC
ACCTGGATCA CGATCCAGCT CTCGCTCGTG GCCACGCTGC TGGGCCTGGT GGTCGCGATC
TTCTGCGCCT GGGGCAAGAC CTCGGGGCCC GGTTGGCTGC GCTTTGTCGT CAACGCCTAC
ATCGAGGTGA TCCGCAACAC GCCGTTCCTC GTGCAGCTGT TCTTCTTTTT CTTTGCGCTG
CCAGCCATCG GGCTGCGCTG GTCGCCGCAG ACGGCCGCGC TGGTGGCCAT GGTGGTGAAC
CTGGGCGCCT ACGCCACGGA AATCATCCGC GCGGGCATCG AGTCGATTCC CAAGGGGCAG
ATCGAGGCGG GCAGGGCGCT CAACCTGAAG CCGTGGGAGA TCTTCCGCTT CGTGATCATC
AAGCCCGCGC TCAAGGCCAT CTACCCGGCG CTCACGAGCC AGTTCATCCT GCTGATGCTG
AGCTCGGCCG TGGTGTCGGT CATCTCGGCC GACGACCTGA CCTCGGTGGC CGCCAACCTG
CAGTCGCAGA CCTTCCGCAG CTTCGAGATC TACATCGTGG TGGCCGCCAT CTATCTTGCG
CTGGCATTGG CCTTCTCGGC GATGTTCAAG CTGATCTACA AGCGCACGCT CAACTACCCG
GACCGCCGGT AG
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| Protein sequence | MNYQFQFDAV FAAWPLLLKG TWITIQLSLV ATLLGLVVAI FCAWGKTSGP GWLRFVVNAY
IEVIRNTPFL VQLFFFFFAL PAIGLRWSPQ TAALVAMVVN LGAYATEIIR AGIESIPKGQ
IEAGRALNLK PWEIFRFVII KPALKAIYPA LTSQFILLML SSAVVSVISA DDLTSVAANL
QSQTFRSFEI YIVVAAIYLA LALAFSAMFK LIYKRTLNYP DRR
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