| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3418 |
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| Symbol | |
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| ID | 7972529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3605306 |
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| End bp | 3605959 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794002 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945301 |
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| Protein GI | 239816391 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTACCT TCGGCTTTCC CGAATTCCTT TTCATCCTCG AAGCGGCCAA GTGGACATTG
GCGCTGTCGG CCATCGCCTT CGTGGGCGGC GCGATCCTGG GCTTGATCAT CGCGCTCATG
CGCACGTCGG AGTCGGCGTG GGCGCGCGGC GTGTCGACCA CCTTCATCCA GATCTTCCAG
GGCACGCCGC TGCTGCTGCA GCTGTTCCTG GTGTTCTTCG GCGCGCCGGT GCTGGGGCTG
GACATCAACC CCTGGGTGGC GGCCGGTGTT GCGCTCATCC TGAACAGCGC CGCCTTCCTC
GGCGAGATCT GGCGCGGCTG CATCGAGGCC ATTCCGCGCG GCCAGTGGGA GGCGGCGCAG
GCGCTCAACC TCAAGTACGC GGCGCGCATG CGCGACGTGG TGCTGCCGCA GGCGCTGAAG
ATCGCGCTTG CGCCCACGGT GGGCTACGTG GTGCAGATCA TCAAGGGCAC GTCGCTCGCC
GCGATCATCG GCTTCGTCGA GGTCACGCGC GCCGGGCAGG TCGTCAACAA CGCCACCTTC
CAGCCGCTGG TCGTGTTCTC GGTGGTGGCC GCCATCTACT TCGCGATCTG CTGGCCGCTG
TCGCTGCTTG CTGCCCGCAT GGAGCGCGGG CGCGCGCGGG CGCTGGCCCG CTGA
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| Protein sequence | MRTFGFPEFL FILEAAKWTL ALSAIAFVGG AILGLIIALM RTSESAWARG VSTTFIQIFQ
GTPLLLQLFL VFFGAPVLGL DINPWVAAGV ALILNSAAFL GEIWRGCIEA IPRGQWEAAQ
ALNLKYAARM RDVVLPQALK IALAPTVGYV VQIIKGTSLA AIIGFVEVTR AGQVVNNATF
QPLVVFSVVA AIYFAICWPL SLLAARMERG RARALAR
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