| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3417 |
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| Symbol | |
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| ID | 7972528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3604449 |
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| End bp | 3605255 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794001 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002945300 |
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| Protein GI | 239816390 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGTA CCACCACCCG CCGCGCAGCG CTGGCAGCAC TTGCATCCCT GGGATTGGGC
GCCGCGCTCA CCGTGTTCGC ACCCTTCGCC TCGGCACAGT CCGTGGCCGA CATCAAGAAG
AAGGGCGAGA TCACCATCGG CATGCTGGTC GACTTTCCGC CCTACGGCAC CACCAACGCG
CAGAACCAGC CCGACGGCTA CGACGCCGAC GTCGCCAGGC TGCTGGCCAA GGACTGGGGC
GTCAAGGCCA ACATCGTGCC GGTGACCGGA CCGAACCGCA TTCCCTTCCT GCTGACCAAC
AAGGTCGACC TGCTGGTCGC CTCGCTCGCC ATCACGCCCG AGCGCGCCAA GCAGGTGCAG
TTCTCGCAGC CCTACGCGGC CGCGACCATC GTGCTGTACG GCGCGACCAA GGCGCCCATC
AAGGCGGCCG GCGACCTGAA AGGCCTGCGC GTTGGCGTGG CCCGTGCGTC CACGCAGGAC
GTGGCCGTGA CCAAGGCCGC GCCCGAAGGC ACCGAGATCC GCCGCTTCGA CGACGACGCC
TCGGCCATGC AGGCGCTGAT CTCGGGCCAG GTCGATGCGA TCGGCTGCTC GGTGACCGTG
GCCGCGCAGA TCGCCAAGCG CGTGCCCGCC GGCACCTACG AGAACAAGTT CACGCTGGTG
CAGCAGTCGA TGGGCATCGC GATGCGTCCG GGCCAGGAAG AGCTGACCAA GGCGGTGAAC
GAATTCGTCG CCAAGAACAC CGCCAACGGC GAGCTCAACA AGCTCTACCA GAAGTGGCTG
CAGGCCGACC TGCCCAAGAT GCAATAA
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| Protein sequence | MTRTTTRRAA LAALASLGLG AALTVFAPFA SAQSVADIKK KGEITIGMLV DFPPYGTTNA
QNQPDGYDAD VARLLAKDWG VKANIVPVTG PNRIPFLLTN KVDLLVASLA ITPERAKQVQ
FSQPYAAATI VLYGATKAPI KAAGDLKGLR VGVARASTQD VAVTKAAPEG TEIRRFDDDA
SAMQALISGQ VDAIGCSVTV AAQIAKRVPA GTYENKFTLV QQSMGIAMRP GQEELTKAVN
EFVAKNTANG ELNKLYQKWL QADLPKMQ
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