Gene Vapar_3415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3415 
Symbol 
ID7972526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3602923 
End bp3603666 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content72% 
IMG OID644793999 
ProductXylose isomerase domain protein TIM barrel 
Protein accessionYP_002945298 
Protein GI239816388 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTTCC AGGTATTGAT TTCTCTGTCG TCCTTCGGTG CGGCCGAGGT GGGCAGGCAT 
GGCCAGCTCT GGTGCGCGCA GATGGCGCTG GAGGCCGGTG CCGATTCGGT CGAGGTGCGC 
GGCGAGATGC TGCGCAACGC CGACGCGGAG CTGCCGTCGC TGGCCGGCCT GGCCGCGGTG 
TATTCGAGCC CCGAGGGGCT CTGGGCCGAA GGCGGCTGGC TCGACAGCGC CGCGCTGGCA 
CGCGGCATCG CGGCCGCAAC CAGGCTCGGC GCCCGGCGGC TCAAGATGTC GATCGGCGAC 
TTTCGCGCGT CTTCGCACGG CTCGCTTTGG GGCCTGAAGG TGCAGCTTGC GGAAACCCCT 
GTCGAGCTGC TGATCGAGAA CGACCAGACC GTGCGCGCCG GCACGCTGCC CGCGCTGCAG 
GCCTTCTTCG ATGCGGCCGA CCGCGCCGGC GTCGAGCTCG GCATGACCTT CGACATGGGC 
AACTGGCACT GGCTCGGCGA GTGCCCGCTG CAGGCCGCGC AGGCGCTGGG CCGCCGCGTG 
CGCTACGTGC ACTGCAAGGG CGCGCAGCGG CTGCCGCACA AGTGGGTGGC GGTGCCGCTG 
GCCGACTCCG CCGCGCCGTG GCGCGCGGTG CTGCGCGCGC TGCCTGCCGA TGTGCCGCAC 
GCCATCGAAT ATCCTCTGGC CGGCGACGAC CTGCCGGCCG TCGTGCGCGC GCAGGTCGAC 
TTCATCCGCG CCGCGCGAGG CTAG
 
Protein sequence
MSFQVLISLS SFGAAEVGRH GQLWCAQMAL EAGADSVEVR GEMLRNADAE LPSLAGLAAV 
YSSPEGLWAE GGWLDSAALA RGIAAATRLG ARRLKMSIGD FRASSHGSLW GLKVQLAETP 
VELLIENDQT VRAGTLPALQ AFFDAADRAG VELGMTFDMG NWHWLGECPL QAAQALGRRV 
RYVHCKGAQR LPHKWVAVPL ADSAAPWRAV LRALPADVPH AIEYPLAGDD LPAVVRAQVD 
FIRAARG