Gene Vapar_3409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3409 
Symbol 
ID7972520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3596680 
End bp3597339 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content73% 
IMG OID644793993 
Producthypothetical protein 
Protein accessionYP_002945292 
Protein GI239816382 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4126] Hydantoin racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAGACA TCCTGCTCAT CAACCCCAAC GCGTCCGTCG CGACCACCGA CATGATGGTC 
GGGATCGCAT CGGCCGAAGC CCCCGCCGGC TGCCGCGTGA CGGGCCGCAC GGCGATGCAG 
GGCCCGCCGA TGATCGTCAA CGAACGCGAG CTGGACGCAG CTGCGGCCGA AGTGCTGAAG 
GTGTGGCAGG CGGCGGCGGG CGAGCGCTGG GACGGCGTGA TCGTCAGCGC CTTCGGCGAC 
CCTGGCGTGG AACTGGTGCG GCGCGATGCG GGCGTGCCCG TGGTCGGCAT CGCCGAGGCG 
TCGATGCTCG CGGCGGGCGA GGGCGGCCGG CGCTTCGGCA TCGCCACCAT CACGCCCGAT 
CTCGCGGTGC CCATCGAGGC GCGCGCCGCC GCGCTCGGGT TGCGCGCGCA GTTCAGCGGC 
ATCCGCCTCA CGCAGGGCGA TCCGCGCACG CTCGCGGCCG ATGCGCGCGC ACTCGAAGAA 
GCGTTGGCGC AGGCCGTTCA GCGCTGCATT GCCGACGATG GTGCCGAGGC CGTGATCATC 
GGCGGCGGCC CGCTCGGGCA GGCGGCGCTC GCGCTGACGC CGCGGTTCAA GGTGCCGGTG 
ATCGCGCCCA TCGGCGCCGC GATACGGCTG CTTTGTTCGA AGCTCGCGGT CACGCCCTGA
 
Protein sequence
MPDILLINPN ASVATTDMMV GIASAEAPAG CRVTGRTAMQ GPPMIVNERE LDAAAAEVLK 
VWQAAAGERW DGVIVSAFGD PGVELVRRDA GVPVVGIAEA SMLAAGEGGR RFGIATITPD 
LAVPIEARAA ALGLRAQFSG IRLTQGDPRT LAADARALEE ALAQAVQRCI ADDGAEAVII 
GGGPLGQAAL ALTPRFKVPV IAPIGAAIRL LCSKLAVTP