| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3406 |
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| Symbol | |
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| ID | 7972517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3592436 |
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| End bp | 3595171 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644793990 |
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| Product | protein of unknown function DUF404 |
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| Protein accession | YP_002945289 |
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| Protein GI | 239816379 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2308] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAACCCC TGAACGAATC CCTGTTCGAT GCCCAGGCGC TGGAATTTCC AGCCGCCCTG
GCGTCGGCGC TCGCGCCGGC CGCCCTGCCC GGCCACTTCG ACGAACTGCG CGGGCAGGCC
ACGCCCGCGG TGCCCGCGCG GCCGGCCGCA GGGGCAGCGC CATTGGCGCC GATGCCGCCC
ATGCTCTACG ACGCTGCGGC GCAGCCGCCG GGTCCGTCGC AGGCTCAATC ACAGACACAA
ACTCAAACCC AGGTCCTTCA GCCCGCCCCC GGCGACACCC CGCCCCTCAC GCCCGCCTGG
AACGCCTTCT TCGAGCAGCT CGGCCCGGGC GGATTCAACG ACCTGCCACG GCGCGCGGTC
AGCCTCGAGC GGCAGATCCG GGACAACGGC GTCACCTACA ACGTCTACGC CGACGCCGAC
GGGCCGCAGC GGCCCTGGTC GCTCGACCTG TTCCCGCTGA TCGTCTCGCC CGAGAGCTGG
GCCCAGATCG AGACCGGCGT GCTGCAGCGC ACGCGCGTGC TCGACCGCGT CATGGCCGAT
GTCTACGGCC CGCAGCAGCT GCTGGCCGAA GGCCTGCTGC CGGCGGCGCT GGTGCACGGC
CATCCCGGCT ACCTGCGCGC GATGCACGGC GTTAAGCCGC CGGGCGACAC ATGGCTGCAC
ATCGCGGCCT TCGACCTTGC CCGCGGGCCC GACGGCAACT GGTGGGTGGT GTCGCAGCGC
ACCCAGGCGC CCTCGGGCCT GGGCTACCTG CTCGAGAACC GGCTGGCCAT CACGCGCCAG
TTTCCGCAGG CCTTCGAGGC CCTGCAGGTG CAGCGCCTGG CCGCCACCTA CAGCGCCATG
ATGGACGGCC TGCAGCGCAT GTGCCCGGCC GGCGTGCCGC CGCACATCGC GCTGCTGACG
CCCGGCCCCT ACAACGAGAC CTACTTCGAG CATGCGTACC TCGCGCGCTA CCTGGGCCTG
ACGCTGGTCG AGGGCAGCGA CCTCACGGTG CGCGACCAGC GCCTCTACCT CAAGACCCTG
CAGGGGCTGC GGCCGGTGCA CGGCCTCATC AAGCGGCTGG ACGACCAGTT CCTCGACCCG
CTCGAGCTGC GCCCCGATTC CACGCTGGGC GTGCCGGGCC TGCTGCAGGC GATTCGCGCC
GGCAATGTGC TGGTGGCCAA CATGCCGGGC TCGGCCTTCC TCGAATCGCC CGCGCTGCTG
GGCTTCCTGC CCGGGCTGGC GCGCCGCCTC ATCGGCGAAA AGCTCAAGCT GCCGGCGCTG
CCGACCTGGT GGTGCGGCGA GCGCGCCGCG CTCGAGGCGG TGCTGCCGCA GCTGGGCGAT
TGCGCCATCA AGCCCACCTA TCCCGGGTCG GACGGACAGA CCAGCTTCGA CGCGGTGCTC
GGCAGCAAGC TGGGCCGGCG CGAGCTCGAC GAATGGGCCG GCCGCATCGT GCGCGAGGGC
GAGGCCCACA CGGTCCAGAG CTACCTGCCG CTGTCGCAGA TGCCCACCTG GGCCAACGAC
ATGGGCCCCG GCCACATCGC GCCGCGCGCG ATGCTGCTGC GCGTCTTCGC GGTGAGCGAC
GGGCCGCAGT CCTGGCGCGT GCTGCCGGGC GGGCTGGCGC GGCTGGCGGG CCGCGATGCG
CAGATCGCCT CCATGCAGCG CGGCGGCAGC AGCGCCGACG TGTGGGTGCA GACGCACGGC
GAGGTCGACC GCACCACGCT GCTGCAGCCA CATGCCACGC CGGCCTCGCT CGCGCGGCAC
CGCGCGCCCG TGACCAGCCG CGCGGCCGAG AACATGTTCT GGCTCGGCCG CTACACCGAG
CGCGCCGAAA ACGCCGTGCG CCTCGCGCGC CTCACGCTCA ACCTGCTGGG CAGCGAAGAC
CAGTCGTCGC GCCCGCTGCT CGACTGGCTG CACCGCATGG CGCTGCGCAA TGCGCTGGTG
CCGGCCGAGG CGCCGAGCGC GCCGCAGTCG CGCCGCGTGT TCGAACGCGC GCTGATCGCC
GAGCTCGGCG ACGTGGCGCG CGGCGGCAGC GTGGGCTTCA GCCTGCGCTG CATCCGGCAG
GCCGCCGCCG CCGTGCGCGA ACGGCTCTCG CAGGACACCT GGAACCAGAT CGTGCGCGCC
GAGGCCGACT TTTTGCGGCG CGCGGCCGAG CAGGCCGGCG AAGGCAGCTT TGCCACCGGC
GCCGCGCTGC GCGCGCTCGA ATCCGCCAGC ACCGCGCTCG CCGCCATGAC CGGCGCGCAG
ACCGACCGCA TGACGCGCGA CGACGCCTGG CGCCTGCTGT CGATCGGCCG CCACATCGAG
CGGCTGGGCT TTCTTGCGAG CGCGCTGGAG GCCGGCTTCG AGAACGGCGC CGTGCACGAA
GTGAGCGGCT TCGAAGCCAT GGTGGCGCTG TTCGACAGCA CCATCACCTT CCACGCCCGC
TACCAGCAGC GGCGCGACGT GGCCACGCTG GTCGACCTGC TGGTGCTCGA TGCCGAGAAC
CCGCGCTCGC TGGCATGGGT CACGCAGACG CTGCGCGGGC GCATCGCGCG CCTGGCCGGC
AGCGCGCCCG GCAAGCTCAC CGCGCTGTCG TACGAGCTGC CCGACCCCGC CGCCTGGACG
CTCGAGCATC TCTGCGCGGC CGGCGCCGAG GCCGACTACC CGGCGCTGGT GCAGCTTCTG
GCCAGTTGCG AGACGGCGGC CTACCATGTG TCCGACGCCA TCGGCACGCG CTATTTCACG
CTCACCTCGG AATCGCTGCG CTCGGTCGGC GCCTGA
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| Protein sequence | MEPLNESLFD AQALEFPAAL ASALAPAALP GHFDELRGQA TPAVPARPAA GAAPLAPMPP
MLYDAAAQPP GPSQAQSQTQ TQTQVLQPAP GDTPPLTPAW NAFFEQLGPG GFNDLPRRAV
SLERQIRDNG VTYNVYADAD GPQRPWSLDL FPLIVSPESW AQIETGVLQR TRVLDRVMAD
VYGPQQLLAE GLLPAALVHG HPGYLRAMHG VKPPGDTWLH IAAFDLARGP DGNWWVVSQR
TQAPSGLGYL LENRLAITRQ FPQAFEALQV QRLAATYSAM MDGLQRMCPA GVPPHIALLT
PGPYNETYFE HAYLARYLGL TLVEGSDLTV RDQRLYLKTL QGLRPVHGLI KRLDDQFLDP
LELRPDSTLG VPGLLQAIRA GNVLVANMPG SAFLESPALL GFLPGLARRL IGEKLKLPAL
PTWWCGERAA LEAVLPQLGD CAIKPTYPGS DGQTSFDAVL GSKLGRRELD EWAGRIVREG
EAHTVQSYLP LSQMPTWAND MGPGHIAPRA MLLRVFAVSD GPQSWRVLPG GLARLAGRDA
QIASMQRGGS SADVWVQTHG EVDRTTLLQP HATPASLARH RAPVTSRAAE NMFWLGRYTE
RAENAVRLAR LTLNLLGSED QSSRPLLDWL HRMALRNALV PAEAPSAPQS RRVFERALIA
ELGDVARGGS VGFSLRCIRQ AAAAVRERLS QDTWNQIVRA EADFLRRAAE QAGEGSFATG
AALRALESAS TALAAMTGAQ TDRMTRDDAW RLLSIGRHIE RLGFLASALE AGFENGAVHE
VSGFEAMVAL FDSTITFHAR YQQRRDVATL VDLLVLDAEN PRSLAWVTQT LRGRIARLAG
SAPGKLTALS YELPDPAAWT LEHLCAAGAE ADYPALVQLL ASCETAAYHV SDAIGTRYFT
LTSESLRSVG A
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