Gene Vapar_3405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3405 
Symbol 
ID7972516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3588809 
End bp3592351 
Gene Length3543 bp 
Protein Length1180 aa 
Translation table11 
GC content69% 
IMG OID644793989 
Producttransglutaminase domain protein 
Protein accessionYP_002945288 
Protein GI239816378 
COG category[S] Function unknown 
COG ID[COG4196] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCATTC ACGCCGCACT CCACCACGTC ACCCACTACA AATACGACCG CCTGGTGCAG 
TTGGGCCCGC AGGTCGTGCG CTTGCGCCCC GCGCCGCACT GCCGCAGCAA CGTCATCTCG
TATTCGCTGC AGGTCGAGCC GGCCGAGCAC TTCGTCAACT GGATGCAGGA CCCGTTCGCC
AACTACCAGG CGCGGCTCGT GTTTCCCGAG AAGACGCGCG AGTTCAAGGT CACGGTCGAC
CTCGTCGTCG AGATGGCGGT CTACAACCCC TTCGACTTCT TCCTCGAACC GCAGGCTGAG
AACTTCCCGT TCAAGTACAC CGCCTCGCAG GCCGAGGAAC TCGCGCCCTA TCTCGTCACA
GAAGAACCCA CGCCGCTGCT GGCGGCTTAC CTCGACAAGA TCGAGCGCAA GGAACAGCGC
ACCATCGACT TCCTGGTCGG CCTCAACCAG CAGGTGCAGC AGGACGTCAA CTACCTGATC
CGCATGGAGC CCGGCGTGCA GACGCCGGAA GAAACGCTCA CCAGCGGCAG CGGCTCCTGC
CGCGACTCGG GCTGGCTGCT GGTGCAGCTG CTGCGCCATT GCGGCCTGGC GGCGCGCTTC
GTCTCGGGCT ACCTGATCCA GCTCACGCCC GACGTCAAGG CGCTCGACGG CCCGAGCGGC
ACCACGGTCG ACTTCACCGA CCTGCACGCC TGGTGCGAGG TCTTCCTGCC CGGCGCGGGC
TGGATCGGCC TGGATGCCAC CTCGGGCCTT TTGGCCGGCG AAGGCCACAT CCCGCTCGCC
TGCACGCCCA CGCCTTCGAG CGCCGCGCCC ATCGAAGGCG GGGTGGACGA AGCCGAGGTC
GACTTCGGCC ATGAGATGAA GGTCACGCGC ATCTACGAAT CGCCGCGCGT GACCAAGCCC
TACACCGAGG AGCAGTGGGC CGAGGTGCTC GCGCTCGGCG ACGCGGTCGA TGCGCGGCTG
AAAGCCGGCG ACGTGCGCCT CACGATGGGC GGCGAGCCCA CCTACGTGGC CACCAGCGAC
CGCGACGCGC CCGAGTGGAA CACCGATGCG CTCGGCCCCA CCAAGCGCGG CTATGCCACC
GAGCTCGTGC ACAAGCTGCG CGCGGAGTAC GGCCAGGGCG GCTTCCTGCA CTTCGGCCAG
GGCAAGTGGT ACCCGGGCGA GCAATTGCCG CGCTGGGCGC TGTCGATCTT CTGGCGCGCC
GACGGCCAGA CGCTCTGGCA CGACCCCGAA CTCTTCGCCG ACGAGCGCGT GCCCACGCAC
TACACGAGCG AAGACGCGCG CCGCTTCACC ACCGTGCTGG CGCACAAGCT CGGCATCACC
GAACGCTACG TCCAGCCCGG CTACGAAGAC GTCTACTACT ACCTCTGGCG CGAGCGCCGC
CTGCCGGTGA ACGTCGACCC CTTCGAGTCG AAGCTCGACG ACGAGCTCGA GCGCGTTCGC
CTGCGCCGCG TGTTCACGCA GAAGCTCGAC GCGGTCATCG GCTACATGCT GCCGCTGGAA
CCCGCCAACG CCGATGCCGA CGCGCCCGCG CTCGAAGGCC CGGGCTGGAA GACCGGCCCC
TGGTTCCTGC GCGACGACCG GCTCTACCTG ATCCCGGGCG ATTCGCCGAT GGGCTACCGC
CTGCCGCTCG ATTCGCAGCC CTGGGCCAGC AAGGGCGACT ACCCCTACCT GGTCGAGCGC
GACCCCACCG CGCCGCGCGC CGCGCTGCCG AGTTCGGCCG ACTACCGCGC GCGCTATGCC
GTGCCGGCCG GCGGCGCAGC GGGCGCCGAC CTGGGCGCCG TGCCCTATGC CTTCGGTGCG
CCGCCGGTGG TGCCTGCGGC CCTGCGCATG CAGGCGCCGG GCGAGACGGC CGCCGCAGGC
ACGGCCGCGA GCGGCGATGC CGCAGCAGCC GACGACGCAG CCGCAGCCAC CCGCTCTTCC
GCCACGCCGT CCACGCGCCA GCCGGTGCGC GGCGAATCGG CCCACTGGGT CACGCGCACC
GCGCTGTGCG TCGAAGTGCG CGATCCGCGC CGCGCCAATG GCCCCGCGGC CGAGAAAAAG
GGCAGCGCCT CGGGCGTGCT CTATGTCTTC ATGCCGCCGC TCGCGCGGCT GGAGGACTAC
CTCGACCTGG TCGCGGCCGT CGAAGCCACC GCGCAGCAGC TCGGCATGCG CATCGTGATG
GAAGGCTATC CGCCGCCGCG CGATCCGCGC CTCAAAATGC TGGCCGTCAC ACCCGACCCG
GGCGTGATCG AAGTCAACAT CCATCCGGCC CACAACTGGA AGGAACTGGT CGCCCACACC
GAGTTTCTCT ACAACGCCGC GTTCGAGACC CGCCTCTCGG CCGAGAAGTT CATGACCGAC
GGGCGCCACA CCGGCACCGG CGGCGGCAAC CACTTCGTGA TGGGCGGTGC CACGCCGGCC
GACAGCCCGT TCCTGCGCCG GCCCGAGCTG CTCGCGAGCC TCTTGCTCTA CTGGCACAAC
CACCCGTCGC TGAGCTACCT GTTCTCGGGC ATGTTCATCG GCCCGACCAG CCAGGCGCCG
CGCGTGGACG AGGCGCGCAA CGACCAGGTC TACGAACTTG AAATCGCGCT GAAGGAAATC
GCGAGAAGCC GCGAGATCCA CGGCCAGAAC ATGCCGGCCT GGCTGGTGGA CCGCACGCTG
CGCAACATCC TGATCGACGT GTCGGGCAAC ACCCACCGCA GCGAGTTCTG CATCGACAAG
CTCTACTCGC CCGACTCGAG CACCGGCCGC CTCGGCCTGC TGGAGCTGCG CGCCTTCGAG
ATGCCGCCGC ATGCGCGCAT GAGCATTGCG CAGCAGCTGC TCATCCGCGC GCTGGTGGCC
CGCTTCTGGG ACGAGCCGTA CAAGGCGCCC GTCACCCGCT GGGGCACCGA GCTGCACGAC
CGCTTCCTGC TGCCGACCTT CGTCAAGATG GACTTCGACG ACGTGATCAG CGAGATGCGC
CAGGCCGGCT TCGCCTTCGA TGCCGACTGG TTCGCGCCGC ACCTGGAGTT CCGCTTTCCG
CTGGTGGGCC AGGTACAGGC CATGGGCGTG GAGCTGTCGC TGCGCAACGC GCTCGAACCG
TGGCACGTGA TGGGCGAGGA AGGCTCGGCC GGCGGCACGG TGCGCTACGT CGATTCGTCG
CTCGAGCGCA TCGAGGTGCG CGTGACCGGC CTGAACGAAA GCCGCCACGT CATCACCGTC
AACGGCAAGG TGCTGCCGCT GCAGCCCACG GGCACGGTCG GCGAATTCGT GGCGGGCGTG
CGCTACAAGG CCTGGAACCC GCCGTCGGCG CTGCATCCGA GCATCGGCGC CCATGCGCCG
CTGACCTTCG ACATCGTCGA CACCTGGATG AAGCGCTCGC TGGGCGGCTG CCAGTACTTC
GTGGCCCACC CGGGCGGGCG CAACTACGAC ACCTTCCCGG TCAATGCCTA CGAGGCGGAA
AGCCGGCGCA TGTCGCGCTT CACGCAGATG GGCCACACGC CGGGGCTGAT GCGCACGCCG
CCGGCCACCA TCGAGCTCGC GGGCAGCCGC GAATTCCCGT TCACGCTCGA TCTGCGGCGC
TGA
 
Protein sequence
MSIHAALHHV THYKYDRLVQ LGPQVVRLRP APHCRSNVIS YSLQVEPAEH FVNWMQDPFA 
NYQARLVFPE KTREFKVTVD LVVEMAVYNP FDFFLEPQAE NFPFKYTASQ AEELAPYLVT
EEPTPLLAAY LDKIERKEQR TIDFLVGLNQ QVQQDVNYLI RMEPGVQTPE ETLTSGSGSC
RDSGWLLVQL LRHCGLAARF VSGYLIQLTP DVKALDGPSG TTVDFTDLHA WCEVFLPGAG
WIGLDATSGL LAGEGHIPLA CTPTPSSAAP IEGGVDEAEV DFGHEMKVTR IYESPRVTKP
YTEEQWAEVL ALGDAVDARL KAGDVRLTMG GEPTYVATSD RDAPEWNTDA LGPTKRGYAT
ELVHKLRAEY GQGGFLHFGQ GKWYPGEQLP RWALSIFWRA DGQTLWHDPE LFADERVPTH
YTSEDARRFT TVLAHKLGIT ERYVQPGYED VYYYLWRERR LPVNVDPFES KLDDELERVR
LRRVFTQKLD AVIGYMLPLE PANADADAPA LEGPGWKTGP WFLRDDRLYL IPGDSPMGYR
LPLDSQPWAS KGDYPYLVER DPTAPRAALP SSADYRARYA VPAGGAAGAD LGAVPYAFGA
PPVVPAALRM QAPGETAAAG TAASGDAAAA DDAAAATRSS ATPSTRQPVR GESAHWVTRT
ALCVEVRDPR RANGPAAEKK GSASGVLYVF MPPLARLEDY LDLVAAVEAT AQQLGMRIVM
EGYPPPRDPR LKMLAVTPDP GVIEVNIHPA HNWKELVAHT EFLYNAAFET RLSAEKFMTD
GRHTGTGGGN HFVMGGATPA DSPFLRRPEL LASLLLYWHN HPSLSYLFSG MFIGPTSQAP
RVDEARNDQV YELEIALKEI ARSREIHGQN MPAWLVDRTL RNILIDVSGN THRSEFCIDK
LYSPDSSTGR LGLLELRAFE MPPHARMSIA QQLLIRALVA RFWDEPYKAP VTRWGTELHD
RFLLPTFVKM DFDDVISEMR QAGFAFDADW FAPHLEFRFP LVGQVQAMGV ELSLRNALEP
WHVMGEEGSA GGTVRYVDSS LERIEVRVTG LNESRHVITV NGKVLPLQPT GTVGEFVAGV
RYKAWNPPSA LHPSIGAHAP LTFDIVDTWM KRSLGGCQYF VAHPGGRNYD TFPVNAYEAE
SRRMSRFTQM GHTPGLMRTP PATIELAGSR EFPFTLDLRR