Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3405 |
Symbol | |
ID | 7972516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3588809 |
End bp | 3592351 |
Gene Length | 3543 bp |
Protein Length | 1180 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793989 |
Product | transglutaminase domain protein |
Protein accession | YP_002945288 |
Protein GI | 239816378 |
COG category | [S] Function unknown |
COG ID | [COG4196] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCATTC ACGCCGCACT CCACCACGTC ACCCACTACA AATACGACCG CCTGGTGCAG TTGGGCCCGC AGGTCGTGCG CTTGCGCCCC GCGCCGCACT GCCGCAGCAA CGTCATCTCG TATTCGCTGC AGGTCGAGCC GGCCGAGCAC TTCGTCAACT GGATGCAGGA CCCGTTCGCC AACTACCAGG CGCGGCTCGT GTTTCCCGAG AAGACGCGCG AGTTCAAGGT CACGGTCGAC CTCGTCGTCG AGATGGCGGT CTACAACCCC TTCGACTTCT TCCTCGAACC GCAGGCTGAG AACTTCCCGT TCAAGTACAC CGCCTCGCAG GCCGAGGAAC TCGCGCCCTA TCTCGTCACA GAAGAACCCA CGCCGCTGCT GGCGGCTTAC CTCGACAAGA TCGAGCGCAA GGAACAGCGC ACCATCGACT TCCTGGTCGG CCTCAACCAG CAGGTGCAGC AGGACGTCAA CTACCTGATC CGCATGGAGC CCGGCGTGCA GACGCCGGAA GAAACGCTCA CCAGCGGCAG CGGCTCCTGC CGCGACTCGG GCTGGCTGCT GGTGCAGCTG CTGCGCCATT GCGGCCTGGC GGCGCGCTTC GTCTCGGGCT ACCTGATCCA GCTCACGCCC GACGTCAAGG CGCTCGACGG CCCGAGCGGC ACCACGGTCG ACTTCACCGA CCTGCACGCC TGGTGCGAGG TCTTCCTGCC CGGCGCGGGC TGGATCGGCC TGGATGCCAC CTCGGGCCTT TTGGCCGGCG AAGGCCACAT CCCGCTCGCC TGCACGCCCA CGCCTTCGAG CGCCGCGCCC ATCGAAGGCG GGGTGGACGA AGCCGAGGTC GACTTCGGCC ATGAGATGAA GGTCACGCGC ATCTACGAAT CGCCGCGCGT GACCAAGCCC TACACCGAGG AGCAGTGGGC CGAGGTGCTC GCGCTCGGCG ACGCGGTCGA TGCGCGGCTG AAAGCCGGCG ACGTGCGCCT CACGATGGGC GGCGAGCCCA CCTACGTGGC CACCAGCGAC CGCGACGCGC CCGAGTGGAA CACCGATGCG CTCGGCCCCA CCAAGCGCGG CTATGCCACC GAGCTCGTGC ACAAGCTGCG CGCGGAGTAC GGCCAGGGCG GCTTCCTGCA CTTCGGCCAG GGCAAGTGGT ACCCGGGCGA GCAATTGCCG CGCTGGGCGC TGTCGATCTT CTGGCGCGCC GACGGCCAGA CGCTCTGGCA CGACCCCGAA CTCTTCGCCG ACGAGCGCGT GCCCACGCAC TACACGAGCG AAGACGCGCG CCGCTTCACC ACCGTGCTGG CGCACAAGCT CGGCATCACC GAACGCTACG TCCAGCCCGG CTACGAAGAC GTCTACTACT ACCTCTGGCG CGAGCGCCGC CTGCCGGTGA ACGTCGACCC CTTCGAGTCG AAGCTCGACG ACGAGCTCGA GCGCGTTCGC CTGCGCCGCG TGTTCACGCA GAAGCTCGAC GCGGTCATCG GCTACATGCT GCCGCTGGAA CCCGCCAACG CCGATGCCGA CGCGCCCGCG CTCGAAGGCC CGGGCTGGAA GACCGGCCCC TGGTTCCTGC GCGACGACCG GCTCTACCTG ATCCCGGGCG ATTCGCCGAT GGGCTACCGC CTGCCGCTCG ATTCGCAGCC CTGGGCCAGC AAGGGCGACT ACCCCTACCT GGTCGAGCGC GACCCCACCG CGCCGCGCGC CGCGCTGCCG AGTTCGGCCG ACTACCGCGC GCGCTATGCC GTGCCGGCCG GCGGCGCAGC GGGCGCCGAC CTGGGCGCCG TGCCCTATGC CTTCGGTGCG CCGCCGGTGG TGCCTGCGGC CCTGCGCATG CAGGCGCCGG GCGAGACGGC CGCCGCAGGC ACGGCCGCGA GCGGCGATGC CGCAGCAGCC GACGACGCAG CCGCAGCCAC CCGCTCTTCC GCCACGCCGT CCACGCGCCA GCCGGTGCGC GGCGAATCGG CCCACTGGGT CACGCGCACC GCGCTGTGCG TCGAAGTGCG CGATCCGCGC CGCGCCAATG GCCCCGCGGC CGAGAAAAAG GGCAGCGCCT CGGGCGTGCT CTATGTCTTC ATGCCGCCGC TCGCGCGGCT GGAGGACTAC CTCGACCTGG TCGCGGCCGT CGAAGCCACC GCGCAGCAGC TCGGCATGCG CATCGTGATG GAAGGCTATC CGCCGCCGCG CGATCCGCGC CTCAAAATGC TGGCCGTCAC ACCCGACCCG GGCGTGATCG AAGTCAACAT CCATCCGGCC CACAACTGGA AGGAACTGGT CGCCCACACC GAGTTTCTCT ACAACGCCGC GTTCGAGACC CGCCTCTCGG CCGAGAAGTT CATGACCGAC GGGCGCCACA CCGGCACCGG CGGCGGCAAC CACTTCGTGA TGGGCGGTGC CACGCCGGCC GACAGCCCGT TCCTGCGCCG GCCCGAGCTG CTCGCGAGCC TCTTGCTCTA CTGGCACAAC CACCCGTCGC TGAGCTACCT GTTCTCGGGC ATGTTCATCG GCCCGACCAG CCAGGCGCCG CGCGTGGACG AGGCGCGCAA CGACCAGGTC TACGAACTTG AAATCGCGCT GAAGGAAATC GCGAGAAGCC GCGAGATCCA CGGCCAGAAC ATGCCGGCCT GGCTGGTGGA CCGCACGCTG CGCAACATCC TGATCGACGT GTCGGGCAAC ACCCACCGCA GCGAGTTCTG CATCGACAAG CTCTACTCGC CCGACTCGAG CACCGGCCGC CTCGGCCTGC TGGAGCTGCG CGCCTTCGAG ATGCCGCCGC ATGCGCGCAT GAGCATTGCG CAGCAGCTGC TCATCCGCGC GCTGGTGGCC CGCTTCTGGG ACGAGCCGTA CAAGGCGCCC GTCACCCGCT GGGGCACCGA GCTGCACGAC CGCTTCCTGC TGCCGACCTT CGTCAAGATG GACTTCGACG ACGTGATCAG CGAGATGCGC CAGGCCGGCT TCGCCTTCGA TGCCGACTGG TTCGCGCCGC ACCTGGAGTT CCGCTTTCCG CTGGTGGGCC AGGTACAGGC CATGGGCGTG GAGCTGTCGC TGCGCAACGC GCTCGAACCG TGGCACGTGA TGGGCGAGGA AGGCTCGGCC GGCGGCACGG TGCGCTACGT CGATTCGTCG CTCGAGCGCA TCGAGGTGCG CGTGACCGGC CTGAACGAAA GCCGCCACGT CATCACCGTC AACGGCAAGG TGCTGCCGCT GCAGCCCACG GGCACGGTCG GCGAATTCGT GGCGGGCGTG CGCTACAAGG CCTGGAACCC GCCGTCGGCG CTGCATCCGA GCATCGGCGC CCATGCGCCG CTGACCTTCG ACATCGTCGA CACCTGGATG AAGCGCTCGC TGGGCGGCTG CCAGTACTTC GTGGCCCACC CGGGCGGGCG CAACTACGAC ACCTTCCCGG TCAATGCCTA CGAGGCGGAA AGCCGGCGCA TGTCGCGCTT CACGCAGATG GGCCACACGC CGGGGCTGAT GCGCACGCCG CCGGCCACCA TCGAGCTCGC GGGCAGCCGC GAATTCCCGT TCACGCTCGA TCTGCGGCGC TGA
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Protein sequence | MSIHAALHHV THYKYDRLVQ LGPQVVRLRP APHCRSNVIS YSLQVEPAEH FVNWMQDPFA NYQARLVFPE KTREFKVTVD LVVEMAVYNP FDFFLEPQAE NFPFKYTASQ AEELAPYLVT EEPTPLLAAY LDKIERKEQR TIDFLVGLNQ QVQQDVNYLI RMEPGVQTPE ETLTSGSGSC RDSGWLLVQL LRHCGLAARF VSGYLIQLTP DVKALDGPSG TTVDFTDLHA WCEVFLPGAG WIGLDATSGL LAGEGHIPLA CTPTPSSAAP IEGGVDEAEV DFGHEMKVTR IYESPRVTKP YTEEQWAEVL ALGDAVDARL KAGDVRLTMG GEPTYVATSD RDAPEWNTDA LGPTKRGYAT ELVHKLRAEY GQGGFLHFGQ GKWYPGEQLP RWALSIFWRA DGQTLWHDPE LFADERVPTH YTSEDARRFT TVLAHKLGIT ERYVQPGYED VYYYLWRERR LPVNVDPFES KLDDELERVR LRRVFTQKLD AVIGYMLPLE PANADADAPA LEGPGWKTGP WFLRDDRLYL IPGDSPMGYR LPLDSQPWAS KGDYPYLVER DPTAPRAALP SSADYRARYA VPAGGAAGAD LGAVPYAFGA PPVVPAALRM QAPGETAAAG TAASGDAAAA DDAAAATRSS ATPSTRQPVR GESAHWVTRT ALCVEVRDPR RANGPAAEKK GSASGVLYVF MPPLARLEDY LDLVAAVEAT AQQLGMRIVM EGYPPPRDPR LKMLAVTPDP GVIEVNIHPA HNWKELVAHT EFLYNAAFET RLSAEKFMTD GRHTGTGGGN HFVMGGATPA DSPFLRRPEL LASLLLYWHN HPSLSYLFSG MFIGPTSQAP RVDEARNDQV YELEIALKEI ARSREIHGQN MPAWLVDRTL RNILIDVSGN THRSEFCIDK LYSPDSSTGR LGLLELRAFE MPPHARMSIA QQLLIRALVA RFWDEPYKAP VTRWGTELHD RFLLPTFVKM DFDDVISEMR QAGFAFDADW FAPHLEFRFP LVGQVQAMGV ELSLRNALEP WHVMGEEGSA GGTVRYVDSS LERIEVRVTG LNESRHVITV NGKVLPLQPT GTVGEFVAGV RYKAWNPPSA LHPSIGAHAP LTFDIVDTWM KRSLGGCQYF VAHPGGRNYD TFPVNAYEAE SRRMSRFTQM GHTPGLMRTP PATIELAGSR EFPFTLDLRR
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