| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3400 |
|---|
| Symbol | |
|---|
| ID | 7970638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3581284 |
|---|
| End bp | 3581745 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644793984 |
|---|
| Product | protein of unknown function DUF1058 |
|---|
| Protein accession | YP_002945283 |
|---|
| Protein GI | 239816373 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3807] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.874568 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGAT CCAGCCGACT GCCCGCGCTG CTCCTCGCAT TCGTTCTCTC GTGGGTGGCA
CTGCCGTCCG CATCCGCCGC CGAGCGGCAG ATGGTCAGTT CCGCGGCCAA GACCCTGAAC
ATGCGCACCG GTCCCGGCCA GCGCTACGAA GCGCACTGGA CCGTGGGCAG GGGCTACCCG
TTCCGCGTCA TCGGCCGCAA GGGCGACTGG CTGCGGGTCA GCGACTTCGA GAACGACAAG
GCATGGGTCT ACCGCCCGAT GACCAGCAAG ACGCCGCATC ACGTGGTGAA GGCGAAGGTG
GCCGTGCTGC GCAGGTCGCC GAGCACGCGC AGCCCGGTGG TGAAGCGGGC GGCCTATGGC
GACGTGCTGC GCACGCTCGA GCGCCGCGGC GACTGGGTCA AGGTCCGGCA CGAAGGCGGC
GGCACCGGCT GGGTGGCGCG GCGCCTGGTG TGGGGCTGGT AG
|
|---|
| Protein sequence | MFRSSRLPAL LLAFVLSWVA LPSASAAERQ MVSSAAKTLN MRTGPGQRYE AHWTVGRGYP
FRVIGRKGDW LRVSDFENDK AWVYRPMTSK TPHHVVKAKV AVLRRSPSTR SPVVKRAAYG
DVLRTLERRG DWVKVRHEGG GTGWVARRLV WGW
|
|---|
| |